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publication

Journals   Books & Reviews  Others

454.
S. Bhowmik, S. Takahashi, and N. Sugimoto
Lighting up of thiazole orange on G-quadruplex DNA by high pressure
ACS Omega, 4, 4325-4329 2019
453.
S. Takahashi, H. Okura, and N. Sugimoto
Bisubstrate function of RNA polymerases triggered by molecular crowding conditions
Biochemistry, 58, 1081-1093 2019 [Selected as a Supplementary Cover].
452.
S. Ghosh, S. Takahashi, T. Endoh, H. Tateishi-Karimata, S. Hazra, and N. Sugimoto
Validation of the Nearest-neighbor Model for Watson–Crick Self-complementary DNA Duplexes in Molecular Crowding Condition
Nucleic Acids Res., 47, 1081-1093 [in press] 2019.
451.
S. Takahashi, J. Yamamoto, A. Kitamura, M. Masataka, and N. Sugimoto
Characterization of intracellular crowding environments with topology-based DNA quadruplex sensors
Anal. Chem., 91, 2586-2590, 2019 [Selected as a Supplementary Cover].
450.
Y. Teng, H. Tateishi-Karimata, and N. Sugimoto
C-rich sequence in a non-template DNA strand regulates structure change of G-quadruplex in a template strand during transcription
Bull. Chem. Soc. Jpn., 92, 572-577, 2019.
449.
大山達也, 建石寿枝, 田中成典, 杉本直己
テトラエチレングリコールで修飾されたグアニン四重鎖の安定性の分子動力学計算による解析
日本核酸化学会誌, 2, 3-10, 2018.
448.
S. Takahashi, B. Chelobanov, K. T. Kim, B. H. Kim, D. Stetsenko, and N. Sugimoto
Design and Properties of Ligand-Conjugated Guanine Oligonucleotides for Recovery of Mutated G-Quadruplexes
Molecules, 23, 3288, 2018.
447.
Y. Teng, H. Tateishi-Karimata, T. Tsuruoka, and N. Sugimoto
A Turn-On Detection of DNA Sequences by Means of Fluorescence of DNA-Templated Silver Nanoclusters via Unique Interactions of a Hydrated Ionic Liquid
Molecules, 23, 2889, 2018.
446.
C. Zhao, H. Song, P. Scott, A. Zhao, H. Tateishi-Karimata, N.Sugimoto, J. Ren, and X. Qu
Mirror-image Dependence: Targeting Enantiomeric G-quadruplex DNA by 10 Pairs of Triplex Metallohelices
Angew. Chem. Int. Ed., 57, 15723-15727, 2018.
445.
T. Endoh and N. Sugimoto
Co-Transcriptional Molecular Assembly Results in a Kinetically Controlled Irreversible RNA Conformational Switch
Anal. Chem., 90, 11193-11197, 2018.
444.
A. B. Rode, T. Endoh, and N. Sugimoto
Crowding Shifts the FMN Recognition Mechanism of Riboswitch Aptamer from Conformational Selection to Induced Fit
Angew. Chem. Int. Ed., 57, 6868-6872, 2018.
443.
S. Takahashi, K. T. Kim, P. Podbevšek, J. Plavec, B. H. Kim, and N. Sugimoto
Recovery of the formation and function of oxidized G-quadruplexes by a pyrene-modified guanine-tract
J. Am. Chem. Soc., 140, 5774-5783, 2018 [Selected as a Supplementary Cover].
442.
M. Trajkovski, T, Endoh, H. Tateishi-Karimata, T. Ohyama, S. Tanaka, J. Plavec, and N. Sugimoto
Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations
Nucleic Acids Res., 46, 4301-4315, 2018.
441.
E. Natan, T. Endoh, L. Haim-Vilmovsky, T. Flock, G. Chalancon, J. T. S. Hopper, B. Kintses, P. Horvath, L. Daruka, G. Fekete, C. Pál, B. Papp, E. Oszi, Z. Magyar, J. A. Marsh, A. H. Elcock, M. N. Babu, C. V. Robinson, N. Sugimoto, and S. A. Teichmann
Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins
Nat. Struct. Mol. Biol., 25, 279-288 2018.
440.
N. Sato, S. Takahashi, H. Tateishi-Karimata, M. E. Hazemi, T. Chikuni, K. Onizuka, N. Sugimoto, and F. Nagatsugi
Alkylating Probes for G-Quadruplex Structure and Evaluation of the Properties of the Alkylated G-Quadruplex DNA
Org. Biomol. Chem., 16, 1436-1441 2018.
439.
Y. Teng, S. Pramanik, H. Tateishi-Karimata, T. Ohyama, and N. Sugimoto
Drastic stability change of X-X mismatch in d(CXG) trinucleotide repeat disorders under molecular crowding condition
Biochem. Biophys. Res. Commun., 496, 601-607 2018.
438.
H. Tateishi-Karimata, K. Kawauchi, and N. Sugimoto
Destabilization of DNA G-quadruplexes by chemical environment changes during tumor progression facilitates transcription
J. Am. Chem. Soc., 140, 642-651 2018 [Selected as a Supplementary Cover].
437.
H. Fujita, Y. Kataoka, R. Nagano, Y. Nakajima, M. Yamada, N. Sugimoto, and M. Kuwahara
Specific Light-Up System for Protein and Metabolite Targets Triggered by Initiation Complex Formation
Sci. Rep., 7, 15191 2017.
436.
S. Nakano, T. Watabe, and N. Sugimoto
Modulation of Ribozyme and Deoxyribozyme Activities Using Tetraalkylammonium Ions
Chem. Phys. Chem., 18, 3614-3619 2017.
435.
S. Takahashi, J. A. Brazier, and N. Sugimoto
Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase
Proc. Natl. Acad. Sci. USA., 114, 9605-9610 2017.
434.
J. Zhou, S. Amrane, F. Rosu, G.F. Salgado, Y. Bian, H. Tateishi-Karimata, E. Largy, D. N. Korkut, A. Bourdoncle, D. Miyoshi, J. Zhang, H. Ju, W. Wang, N. Sugimoto, V. Gabelica, and J. Mergny
Unexpected Position-Dependent Effects of Ribose G‑Quartets in G‑Quadruplexes
J. Am. Chem. Soc., 139, 7768-7779 2017.
433.
H.Tateishi-Karimata, T.Ohyama, T.Muraoka, P.Podbevsek, AM.Wawro, S.Tanaka, SI.Nakano, K.Kinbara, J.Plavec, N.Sugimoto
Newly characterized interaction stabilizes DNA structure: oligoethylene glycols stabilize G-quadruplexes CH-π interaction
Nucleic Acids Res., 45, 7021-7030 2017.
432.
S. Takahashi, N. Sugimoto
Volumetric contributions of loop regions of G-quadruplex DNA to the formation of the tertiary structure
Biophys. Chem.,231, 146-154 2017.
431.
SI. Nakano, N. Sugimoto
Model studies of the effects of intracellular crowding on nucleic acid interactions
Mol Biosyst., 13, 32-41 2017.
430.
A. Pica, I. R. Krauss, V. Parente, H. Tateishi-Karimata, S. Nagatoishi, K. Tsumoto, N. Sugimoto and F. Sica
Through-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers
Nucleic Acids Res., 45, 461-469 2017.
429.
S. Takahashi, S. Bhowmik and N. Sugimoto
Volumetric analysis of formation of the complex of G-quadruplex DNA with hemin using high pressure
J. Inorg. Biochem., 166, 199-207 2017.
428.
T. Fujii, P. Podbevšek, J. Plavec, N. Sugimoto
Effects of metal ions and cosolutes on G-quadruplex topology
J. Inorg. Biochem., 166, 190-198 2017.
427.
Y. Ueda, Y. Zouzumi, A. Maruyama, S. Nakano, N. Sugimoto and D. Miyoshi
Effects of trimethylamine N-oxide and urea on DNA duplex and G-quadruplex
Sci. Tech. Adv. Mater., 17, 753-759 2016.
426.
T. Endoh, C. Annoni, D. Hnedzko, E. Rozners, N. Sugimoto
Triplex-forming PNA modified with unnatural nucleobases: the role of protonation entropy in RNA binding
Phys. Chem. Chem. Phys., 18, 32002-32006 2016.
425.
S. Nakano, Y. Tanino, H. Hirayama, N. Sugimoto
Thermal stability of RNA structures with bulky cations in mixed aqueous solutions
Biophys. J., 111, 1350-1360 2016.
424.
AB Rode, T. Endoh, N. Sugimoto
tRNA shifts the G-quadruplex-hairpin conformational equilibrium in RNA towards the hairpin conformer
Angew. Chemie. Int. Ed., 46, 14315-14319 2016[Selected as an Inside Back Cover].
423.
S. Takahashi and N. Sugimoto
Pressure effect on the folding of G-quadruplex DNA modified with hexaethylene glycol
Mol. Enz. Drug Targ., 2, 3 2016.
422.
M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto
Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory
Chem. Phys. Lett., 660, 250-255 2016.
421.
H. Fujita, Y. Kataoka, S. Tobita, M. Kuwahara, N. Sugimoto
Novel one-tube-one-step real-time methodology for rapid transcriptomic biomaker detection: signal amplification by ternary initiation complexes
Anal.Chem., 88, 7137-7144 2016.
420.
H. Tateishi-Karimata, T. Muraoka, K. Kinbara, N. Sugimoto
G-quadruplexes with tetraethylene glycol-modified deoxythymidines are resistant to nucleases and inhibit HIV-1 reverse transcriptase
ChemBioChem. 2016 in press.
419.
N. Yamaguchi, Y. Zouzumi, N. Shimada, S. Nakano, N. Sugimoto, A. Maruyama, D. Miyoshi
A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers
Chem Commun., 52, 7446-7449 2016.
418.
C. Annoni, T. Endoh, D. Hnedzko, E. Rozners, N. Sugimoto
Triplex-forming peptide nucleic acid modified with 2-aminopyridine as a new tool for detection of A-to-I editing
Chem Commum., 52, 7935-7938 2016.
417.
S. Nakano, H. Oka, M. Fujii, N. Sugimoto
Use of a Ureido-Substituted Deoxycytidine Module for DNA Assemblies
Nucleosides Nucleotides Nucleic Acids., 35, 370-378 2016.
416.
H. Tateishi-Karimata and N. Sugimoto
Expansion of the DNA ‘Alphabet’ beyond Natural DNA Recognition.
ChemBioChem. 2016 in press.
415.
T. Endoh, N. Sugimoto
Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells.
Sci Rep., 6, 22719 2016.
414.
T. Endoh, AB Rode, S. Takahashi, Y. Kataoka, M. Kuwahara, N. Sugimoto
Real-time monitoring of G-quadruplex formation during transcription
Anal. Chem., 88, 1984-1989 2016.
413.
J. Zhou, H. Tateishi-Karimata, JL Mergny, M. Cheng, Z. Feng, D. Miyoshi, N. Sugimoto, C. Li
Reevaluation of the stability of G-quadruplex structures under crowding conditions
Biochimie., 121, 204-208 2016.
412.
A. Zhao, C. Zhao, H. Tateishi-Karimata, J. Ren, N. Sugimoto, X. Qu
Incorporation of O6-methylguanine restricts the conformational conversion of the human telomere G-quadruplex under molecular crowding conditions
Chem. Commum., 52, 1903-1906 2016.
411.
T. Endoh, D. Hnedzko, E. Rozners,d N. Sugimoto
Nucleobase-modified PNA suppresses translation by forming a triple helix with a hairpin structure in mRNA in vitro and in cells
Angew. Chem. Int. Ed., 55, 899-903 2016 [Selected as a Front Cover].
410.
M. Nakano, H. Tateishi-Karimata, S. Tanaka, F. Tama, O. Miyashita, S. Nakano, N. Sugimoto
Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory
Nucleic Acids Res., 43, 10114-10125 2015.
409.
R. Maeda, H. Yaku, T. Nakabayashi, T. Murashima, N. Sugimoto, N. Ohta, D. Miyoshi
DNA G-quadruplex detection system employing a protein fibril ligand
Telomere and Telomerase., 2, e691 2015.
408.
Y. Ueda, T. Konno, K. Ishihara, N. Sugimoto, D. Miyoshi
DNA structures under molecular crowding conditions with a phosphorylcholine derivative (MPC)
Transact. Mater. Res. Soc. Japan., 40, 99-102 2015.
407.
S. Takahashi and N. Sugimoto
Pressure-dependent formation of i-motif and G-quadruplex DNA structures
Phys. Chem. Chem. Phys., 17, 31004-31010 2015 [Selected as an Inside Back Cover].
406.
S. Nakano, Y. Kitagawa, D. Miyoshi, and N. Sugimoto
Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg2+-unsaturated solutions
J. Biol. Inorg. Chem., 20, 1049-1058 2015.
405.
S. Nakano, Y. Kitagawa, H. Yamashita, D. Miyoshi, and N. Sugimoto
Effects of Cosolvents on the Folding and Catalytic Activities of the Hammerhead Ribozyme
ChemBioChem., 16, 1803-1810 2015.
404.
T. Endoh and N. Sugimoto
Rational Design and Tuning of Functional RNA Switch to Control an Allosteric Intermolecular Interaction
Anal. Chem., 87, 7628–7635 2015.
403.
A.B. Rode, T. Endoh, and N. Sugimoto
Key Tertiary Interactions in FMN Riboswitch Aptamers Required for Ligand Binding
Bull. Chem. Soc. Jpn., 88, 946-948 2015 [Highlighted as a Selected Paper].
402.
T. Fujii and N. Sugimoto
Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH
Phys. Chem. Chem. Phys., 17, 16719-16722 2015.
401.
H. Tateishi-Karimata, S. Pramanik, and N. Sugimoto
DNA sensor's selectivity enhancement and protection from contaminating nucleases due to a hydrated ionic liquid
Analyst., 140, 4393-4398 2015.
400.
H. Yaku, T. Murashima, D. Miyoshi, and N. Sugimoto
A mRNA-Responsive G-Quadruplex-Based Drug Release System
Sensors., 15, 9388-9403 2015.
399.
H. Tateishi-Karimata, M. Nakano, S. Pramanik, S. Tanaka, and N. Sugimoto
i-motifs are more stable than G-quadruplexes in a hydrated ionic liquid
Chem. Commun., 51, 6909-6912 2015 [Selected as a Back Cover].
398.
K. Usui, A. Okada, K. Kobayashi, N. Sugimoto
Control of guanine-rich DNA secondary structures depending on the protease activity using a designed PNA peptide
Org. Biomol. Chem., 13, 2022-2025 2015.
397.
M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto
Choline Ions Stabilize A-T Base Pairs by Fitting into Minor Groove
JPS Conf. Proc., 5, 11008 2015.
396.
M. Marušič, H. Tateishi-Karimata, N. Sugimoto, and J. Plavec
Structural foundation for DNA behavior in hydrated ionic liquid: An NMR study
Biochimie, 108, 169-177 2015.
395.
A.B. Rode, T. Endoh, N. Sugimoto
Tuning riboswitch-mediated gene regulation via rational control of aptamer ligand binding properties
Angew. Chem. Int. Ed., 54, 905-909 2015.
394.
S. Nakano, and N. Sugimoto
Roles of the amino group of purine bases in the thermodynamic stability of DNA base paring
Molecules, 19, 11613-11627 2014.
393.
S. Nakano, Y. Kitagawa, D. Miyoshi, and N. Sugimoto
Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds
FEBS Open Bio., 4, 643-650 2014.
392.
B. Xu, C. Zhao, Y. Chen, H. Tateishi-Karimata, J. Ren, N. Sugimoto, and X. Qu
Methyl substitution regulates the enantioselectivity of supramolecular complex binding to human telomeric G-Quadruplex DNA
Chem. Eur. J., 20, 16467-16472 2014.
391.
S. Pramanik, H. Tateishi-Karimata, N. Sugimoto
Organelle-mimicking liposome dissociates G-quadruplexes and facilitates transcription
Nucleic Acids Res., 42, 12949-12959 2014.
390.
M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto
The affinity of molecular ions for DNA structures is determined by solvent accessible surface area
J. Phys. Chem. B., 118, 9583-9594 2014.
389.
T. Endoh, N. Sugimoto
Aptamer-based universal fluorometric sensors based on allosteric modulation of RNA-peptide interactions
ChemMedChem, 9, 2045-2048 2014.
388.
H. Tateishi-Karimata, S. Pramanik, S. Nakano, D. Miyoshi and N. Sugimoto
Dangling ends perturb the stability of RNA duplex responsive to surrounding condition
ChemMedChem, 9, 2150-2155 2014 [Selected as an Inside Cover].
387.
D. Miyoshi, Y. Ueda, N. Shimada, S. Nakano, N. Sugimoto, A. Maruyama
Drastic stabilization of parallel DNA hybridizations by a polylysine comb-type copolymer with hydrophilic graft chain
ChemMedChem, 9, 2156-2163 2014 [Selected as a Front Cover].
386.
H. Tateishi-Karimata, and N. Sugimoto
Structure, stability and behavior of nucleic acids in ionic liquids
Nucleic Acids Res., 42, 8831-8844 2014.
385.
H. Tateishi-Karimata, N. Isono, and N. Sugimoto
New insights into transcription fidelity : thermal stability of non-canonical structures in template DNA regulates transcriptional arrest, pause, and slippage
PLOS ONE, 9, e90580 2014.
384.
H. Tateishi-karimata, M. Nakano, and N. Sugimoto
Comparable stability of Hoogsteen and Watson-Crick base pairs in ionic liquid choline dihydrogen phosphate
Sci. Rep., 4, 3593 2014.
383.
H. Yaku, T. Murashima, D. Miyoshi, and N. Sugimoto
In vitro assays predicting of telomerase inhibitory effect of G-quadruplex ligands in cell nuclei
J. Phys. Chem. B., 118, 2605-2614 2014 [Selected as a Front Cover].
382.
M. Nakano, H. Tateishi-Karimata, S. Tanaka, and N. Sugimoto
Choline ion interactions with DNA atoms explain unique stabilization of A-T base pairs in DNA duplexes: A microscopic view
J. Phys. Chem. B., 118, 379-389 2014 [Selected as a Front Cover].
381.
L. Wu, J. Wang, M. Yin, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
Reduced graphene oxide upconversion nanoparticle hybrid for electrochemi luminescent sensing of a prognostic indicator in early-stage cancer
Small, 10, 330-336 2014.
380.
Y. Imaizumi, Y. Kasahara, H. Fujita, S. Kitadume, H. Ozaki, T. Endoh, M. Kuwahara, and N. Sugimoto
Efficacy of base-modification on target binding of small molecule DNA aptamers
J. Am. Chem. Soc., 135, 9412-9419 2013.
379.
S. Takahashi and N. Sugimoto
Effect of pressure on the stability of G-quadruplex DNA: Thermodynamics under crowding conditions
Angew. Chem. Int. Ed., 52, 13774-13778 2013 [Selected as an Inside Back Cover].
378.
T. Endoh, Y. Kawasaki, and N. Sugimoto
Suppression of gene expression by G-quadruplexes in open reading frames depends on G-quadruplex stability
Angew. Chem. Int. Ed., 52, 5522-5526 2013.
377.
H. Tateishi-Karimata and N. Sugimoto
Control of stability and structure of nucleic acids using cosolutes
Methods, 67, 151-158 2013.
376.
A. Pica, I. Russo Krauss, A. Merlino, S. Nagatoishi, N. Sugimoto, and F. Sica
Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer
FEBS J., 280, 6581-6588 2013.
375.
T. Endoh, and N. Sugimoto
Unusual-1 ribosomal frameshift caused by stable RNA G-quadruplex in open reading frame
Anal. Chem., 85, 11435-11439 2013.
374.
H. Yaku, T. Murashima, D. Miyoshi, and N. Sugimoto
A highly sensitive telomerase activity assay that eliminates false-negative results caused by PCR inhibitors
Molecules, 18, 11751-11767 2013.
373.
A. Marchand, R. Ferreira, H. Tateishi-Karimata, D. Miyoshi, N. Sugimoto, and V. Gabelica
Sequence and solvent effects on telomeric DNA bimolecular G-quadruplex folding kinetics
J. Phys. Chem. B, 117, 12391–12401 2013 [Selected as a Front Cover].
372.
V. Gabelica, R. Maeda, T. Fujimoto, H. Yaku, T. Murashima, N. Sugimoto, and D. Miyoshi
Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex
Biochemistry, 52, 5620-5628 2013.
371.
S. Nakano, Y. Uotani, Y. Sato, H. Oka, M. Fujii, and N. Sugimoto
Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules
Nucleic Acids Res., 41, 8581-8590 2013.
370.
H. Fujita, Y. Imaizumi, Y. Kasahara, S. Kitadume, H. Ozaki, M. Kuwahara, and N. Sugimoto
Structural and affinity analyses of G-quadruplex DNA aptamers for camptothecin derivatives
Pharmaceuticals, 6, 1082-1093 2013.
369.
V. Gabelica, R. Maeda, T. Fujimoto, H. Yaku, T. Murashima, N. Sugimoto, and D. Miyoshi
Multiple and cooperative binding of fluorescence light-up probe Thioflavin T with human telomere DNA G-quadruplex
Pharmaceuticals, 6, 1082-1093 2013.
368.
A. Marchand, R. Ferreira, H. Tateishi-Karimata, D. Miyoshi , N. Sugimoto, and V. Gabelica
Sequence and Solvent Effects on Telomeric DNA Bimolecular G-Quadruplex Folding Kinetics
J. Phys. Chem. B, 117, 12391-12401 2013.
367.
A. B. Rode, T. Endoh, H. Tateishi-Karimata, S. Takahashi, and N. Sugimoto
Real-time monitoring of DNA hybridization kinetics on living cell surfaces
Chem. Commun., 49, 8444-8446 2013 [Selected as a Front Cover].
366.
T. Endoh, Y. Kawasaki, and N. Sugimoto
Translational halt during elongation caused by G-quadruplex formed by mRNA
Methods, 64, 73-78 2013.
365.
H. Yaku, T. Murashima, H. Tateishi-Karimata, S. Nakano, D. Miyoshi, and N. Sugimoto
Study on effects of molecular crowding on G-quadruplex-ligand binding and ligand-mediated telomerase inhibition
Methods, 64, 19-27 2013.
364.
Y. Imaizumi, Y. Kasahara, S. Kitadume, H. Ozaki, T. Endoh, M. Kuwahara and N. Sugimoto
Efficacy of Base-modification on Target Binding of Small Molecule DNA Aptamers
J. Am. Chem. Soc., 135, 9412-9419 2013.
363.
T. Endoh, Y. Kawasaki, and N. Sugimoto
Stability of RNA quadruplex in open reading frame determines proteolysis of human estrogen receptor α
Nucleic Acids Res., 41, 6222-6231 2013.
362.
A. Okada, K. Usui, M. Taniguchi, K. Kobayashi, and N. Sugimoto
Construction of artificial peptides for control of DNA G-quadruplex structures depending on protease activity toward regulation of protein expression
Peptide Sci., 2012, 285-286 2013.
361.
H. Tateishi-Karimata, S. Nakano and N. Sugimoto
Quantitative Analyses of Nucleic Acid Stability under the Molecular Crowding Condition Induced by Cosolutes
Curr. Protoc. Nucleic Acid Chem..
360.
T. Endoh, Y. Kawasaki and N. Sugimoto
Suppression of Gene Expression by G-quadruplexes in Open Reading Frames Depends on G-quadruplex Stability
Angew. Chem. Int. Ed., 52, 5522-5526 2013.
359.
T. Endoh and N. Sugimoto
Selection of RNAs for constructing “Lighting-UP” biomolecular switches in response to specific small molecules
PLOS ONE, 8, e60222 2013.
358.
T. Fujimoto, S. Nakano, N. Sugimoto, and D. Miyoshi
Thermodynamics - hydration relationships within loops that affect G-quadruplexes under molecular crowding conditions
J. Phys. Chem. B, 117, 963-972 2013 [Selected as a Front Cover].
357.
H. Yu, X. Gu, S. Nakano, D. Miyoshi, and N. Sugimoto
Beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions
J. Am. Chem. Soc., 134, 20060-20069 2012 [Selected as a Front Cover].
356.
H. Tateishi-Karimata and N. Sugimoto
A–T base pairs are more stable than G–C base pairs in a hydrated ionic liquid
Angew. Chem. Int. Ed., 51, 1416-1419 2012 [Selected as a Back Cover].
355.
S. Nakano, H. Oka, D. Yamaguchi, M. Fujii, and N. Sugimoto
Base-pairing selectivity of a ureido-linked phenyl-2'-deoxycytidine derivative
Org. Biomol. Chem., 10, 9664-9670 2012.
354.
B. Xu, C. Zhao, W. Wei, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
Aptamer carbon nanodot sandwich used for fluorescent detection of protein
Analyst, 137, 5483–5486 2012.
353.
S. Nagatoishi and N. Sugimoto
Interaction of water with the G-quadruplex loop contributes to the binding energy of G-quadruplex to protein
Mol. Biosyst., 8, 2766-2770 2012.
352.
H. Yaku, T. Murashima, D. Miyoshi, N. Sugimoto
Specific Binding of Anionic Porphyrin and Phthalocyanine
Molecules, 17, 10586-10613 2012.
351.
S. Nakano, H. Hirayama, D. Miyoshi, and N. Sugimoto
Dimerization of nucleic acid hairpins in the conditions caused by neutral cosolutes
J. Phys. Chem. B, 116, 7406-7415 2012.
350.
V. Kumar, T. Endoh, K. Murakami, and N. Sugimoto
Dehydration from conserved stem regions is fundamental for ligand-dependent conformational transition of the adenine-specific riboswitch
Chem. Commun., 48, 9693-9695 2012 [Selected as a Front Cover].
349.
H. Yu, Gu X. Gu, S. Nakano, D. Miyoshi and N. Sugimoto
The beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions
J. Am. Chem. Socs., 134, 20060-20069 2012.
348.
S. Saxena, S. Nagatoishi, D. Miyoshi, and N. Sugimoto
Structural and functional characterization of RecG helicase under dilute and molecular crowding conditions
J. Nucleic Acids, 2012, ID 392039, 8 pages 2012.
347.
S. Nakano, D. Yamaguchi, H. Tateishi-Karimata, D. Miyoshi, and N. Sugimoto
Hydration changes upon DNA folding studied by osmotic stress experiments
Biophys. J., 102, 2808-2817 2012.
346.
H. Yaku, T, Fujimoto, T. Murashima, D. Miyoshi and N. Sugimoto
Phthalocyanines: a new class of G-quadruplex-ligands with many potential applications
Chem. Commun., 48, 6203-6216 2012.
345.
K. Usui, K. Kobayashi, and N. Sugimoto
Development of PNA-peptides controlling DNA G-quadruplex structures depending on protease activity
Peptide Sci., 2011, 315-316 2012.
344.
S. Nagatoishi, R. Ono, and N. Sugimoto
The yields of transcripts for RNA polymerase regulated by hairpin structures in nascent RNAs
Chem. Commun., 48, 5121-5123 2012.
343.
S. Pramanik, S. Nagatoishi, and N. Sugimoto
DNA tetraplex structure formation from human telomeric repeat motif (TTAGGG):(CCCTAA) in nanocavity water pools of reverse micelles
Chem. Commun., 48, 4815-4817 2012 [Selected as a Front Cover].
342.
H. Tateishi-Karimata and N. Sugimoto
A–T Base Pairs are More Stable Than G–C Base Pairs in a Hydrated Ionic Liquid
Angew. Chem. Int. Ed., 51, 1416-1419 2012.
341.
L. Feng, L. Wu, J. Wang, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
Detection of a prognostic indicator in early-stage cancer using functionalized graphene-based peptide sensors
Adv. Mater., 24, 125-131 2012.
340.
T. Endoh, Y. Kawasaki, and N. Sugimoto
Synchronized translation for detection of temporal stalling of ribosome during single-turnover translation
Anal. Chem., 84, 857-861 2012.
339.
K. Usui, K. Kobayashi, and N. Sugimoto
A PNA peptide inducing DNAs to form G-quadruplex structures depending on a protease activity
Peptides, 2011, 152-153 2011.
338.
M. Tokui, T. Yamauchi, D. Miyoshi, H. Kamiya, A. Nishimura, and N. Sugimoto
Rational design of a new IMP aptamer based on a TPP riboswitch and a hypoxanthine aptamer
Chem. Lett., 40, 1313-1314 2011.
337.
S. Nagatoishi, D. Miyoshi and N. Sugimoto
Effects of protein binding on DNA G-quadruplex structures
IREBIC, 2, 129-134 2011.
336.
S. Pramanik, S. Nagatoishi, S. Saxena, J. Bhattacharyya, and N. Sugimoto
Conformational flexibility influences degree of hydration of nucleic acid hybrids
J. Phys. Chem. B, 115, 13862-13872 2011.
335.
T. Fujimoto, S. Nakano, D. Miyoshi, and N. Sugimoto
The effects of molecular crowding on the structure and stability of G-quadruplexes with an abasic site
J. Nucleic Acids., 2011, ID 857149, 9 pages 2011.
334.
J. Kawakami, Y. Yamaguchi, and N. Sugimoto
Triplet analysis that identifies unpaired regions of functional RNAs
J. Nucleic Acids., 2011, ID 471843, 6 pages 2011.
333.
S. Nakano, M. Fujii, and N. Sugimoto
Use of nucleic acid analogs for the study of nucleic acid interactions
J. Nucleic Acids., 2011, ID 967098, 11 pages 2011.
332.
K. Kobayashi, H. Tateishi-Karimata, K. Tsutsui, Y. Wada, and N. Sugimoto
DNA morphologic changes induced by spermine on a gold surface under DNA crowding conditions
Chem. Lett., 40, 855-857 2011 [Highlighted as an Editorial Choice].
331.
J. Bhattacharyya, S. Maiti, S. Muhuri, S. Nakano, D. Miyoshi, and N. Sugimoto
Effect of locked nucleic acid modification on thermal stability of noncanonical DNA structure
Biochemistry, 50, 7414–7425 2011.
330.
X. Wang, L. Wu, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
Label-free colorimetric and quantitative detection of cancer marker protein using noncrosslinking aggregation of Au/Ag nanoparticles induced by target-specific peptide probe
Biosens. Bioelectron., 26, 4804-4809 2011.
329.
S. Nakano, T. Kanzaki, M. Nakano, D. Miyoshi, and N. Sugimoto
Measurements of the binding of a large protein using a substrate density-controlled DNA chip
Anal. Chem., 83, 6368-6372 2011.
328.
S. Nagatoishi, N. Isono, K. Tsumoto, and N. Sugimoto
Hydration is required in DNA G-quadruplex-protein binding
ChemBioChem, 12, 1822-1826 2011.
327.
T. Endoh and N. Sugimoto
Gene regulation system with an artificial RNA switch operating in human cells
ChemBioChem, 12, 1174-1178 2011.
326.
S. Nagatoishi, N. Isono, K. Tsumoto, and N. Sugimoto
Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding
Biochimie, 93, 1231-1238 2011.
325.
S. Pramanik, K. Nakamura, K. Usui, S. Nakano, S. Saxena, J. Matsui, D. Miyoshi, and N. Sugimoto
Thermodynamic stability of Hoogsteen and Watson–Crick base pairs in the presence of histone H3-mimicking peptide
Chem. Commun., 47, 2790-2792 2011 [Selected as a Front Cover].
324.
K. Usui, K. Kobayashi, and N. Sugimoto
PNA-peptide conjugates for regulation of DNA and RNA G-quadruplex structures depending on a particular protease concentration
Peptides, 2010, 608-609 2010.
323.
K. Usui, M. Mie, T. Andou, N. Sugimoto, H. Mihara, and E. Kobatake
Fluorescent and luminescent fusion proteins for detection of amyloid beta peptide localization and aggregation
Peptides, 2010, 488-489 2010.
322.
X. Wang, J. Geng, D. Miyoshi, J. Ren, N. Sugimoto, and X. Qu
A rapid and sensitive “add-mix-measure” assay for multiple proteinases based on one gold nanoparticle-peptide-fluorophore conjugate
Biosens. Bioelectron., 26, 743-747 2010.
321.
X. Wang, C. Wang, K. Qu, Y. Song, J. Ren, D. Miyoshi, N. Sugimoto, and X. Qu
Ultrasensitive and selective detection of a prognostic indicator in early-stage cancer using graphene oxide and carbon nanotubes
Adv. Funct. Mater., 20, 3967-3971 2010 [Selected as a Front Cover].
320.
S. Nakano, H. Oka, Y. Uotani, K. Uenishi, M. Fujii, and N. Sugimoto
Stacking interaction in the middle and at the end of a DNA helix studied with non-natural nucleotides
Mol. Biosys., 6, 2023-2029 2010.
319.
K. Dutta, T. Fujimoto, M. Inoue, D. Miyoshi, and N. Sugimoto
Development of new functional nanostructures consisting of both DNA duplex and quadruplex
Chem. Commun., 46, 7772-7774 2010.
318.
M. Kuwahara, and N. Sugimoto
Molecular evolution of functional Nucleic Acids with chemical modifications
Molecules, 15, 5423-5444 2010.
317.
S. Saxena, D. Miyoshi, and N. Sugimoto
Sole and stable RNA duplexes of G-rich sequences located in the 5'-untranslated region of protooncogenes
Biochemistry, 49, 7190-7201 2010.
316.
H. Yaku, T. Murashima, D. Miyoshi, and N. Sugimoto
Anionic phthalocyanines targeting G-quadruplexes and inhibiting telomerase activity in the presence of excessive DNA duplexes
Chem. Commun., 46, 5740-5742 2010.
315.
K. Usui, M. Mie, T. Andou, N. Sugimoto, H. Mihara, and E. Kobatake
Construction of detection system for amyloid beta peptide localization and aggregation using fluorescent and luminescent fusion proteins
Peptide Sci., 2009, 111-112 2010.
314.
D.H. Zhang, T. Fujimoto, S. Saxena, H.Q. Yu, D. Miyoshi, and N. Sugimoto
Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors
Biochemisry, 49, 4554-4563 2010.
313.
A. Rajendran, S. Nakano, and N. Sugimoto
Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH
Chem. Commun., 46, 1299-1301 2010.
312.
Y. Sasaki, D. Miyoshi, and N. Sugimoto
Utilization of salmon milt DNA against UV damage
App. Biochem. Biotech., 160, 2458-2466 2010.
311.
N. Sugimoto
Designable DNA functions toward new nanobiotechnology
Bull. Chem. Soc. Jpn., 82, 1-10 2009.
310.
S. Nakano, H. Oka, Y. Uotani, K. Uenishi, M. Fujii, and N. Sugimoto
Dynamics and energetics of the base flipping conformation studied with base pair-mimic nucleosides
Biochemistry, 48, 11304-11311 2009.
309.
S. Nakano, H. Tateishi-Karimata, Y. Kitagawa, and N. Sugimoto
Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes
J. Am. Chem. Soc., 131, 16881-16888 2009.
308.
H. Kanno, S. Nakano, A. Kubo, T. Mimura, N. Tajima and N. Sugimoto
Neuronal differentiation of neural progenitor cells by intracellular delivery of synthetic oligopeptide derived from von Hippel-Lindau protein
Protein & Peptide Letters, 16, 1291-1296 2009.
307.
J. Matsui, J. Nagano, D. Miyoshi, K. Tamaki, N. Sugimoto
An approach to peptide-based ATP receptors by a combination of random selection, rational design, and molecular imprinting
Biosens. Bioelectron., 25, 563-567 2009.
306.
S. Muhuri, K. Mimura, D. Miyoshi, and N. Sugimoto
Stabilization of three-way junctions of DNA under molecular crowding conditions
J. Am. Chem. Soc., 131, 9268-9280 2009.
305.
D. Miyoshi, K. Nakamura, H. Tateishi-Karimata, T. Ohmichi, and N. Sugimoto
Hydration of Watson-Crick base pairs and dehydration of Hoogsteen base pairs inducing structural polymorphism under molecular crowding conditions
J. Am. Chem. Soc., 131, 3522-3531 2009.
304.
S. Nakano, H. Oka, Y. Uotani, K. Uenishi, M. Fujii, and N. Sugimoto
Dynamics and energetics of the base flipping conformation studied with base pair-mimic nucleosides
Biochemistry, 48, 11304-11311 2009.
303.
H. Kanno, S. Nakano, A. Kubo, T. Mimura, N. Tajima, and N. Sugimoto
Neuronal differentiation of neural progenitor cells by intracellular delivery of synthetic oligopeptide derived from Von Hippel-Lindau protein
Protein Pept. Lett., 16, 1291-1296 2009.
302.
J. Matsui, J. Nagano, D. Miyoshi, K. Tamaki, and N. Sugimoto
An approach to peptide-based ATP receptors by a combination of random selection, rational design, and molecular imprinting
Biosens. Bioelectron., 25, 563-567 2009.
301.
L. Wu, K. Koumoto, and N. Sugimoto
Reversible stability switching of a hairpin DNA via a photo-responsive linker unit
Chem. Commun., 14, 1915-1917 2009.
300.
J. Matsui, M. Takayose, K. Akamatsu, H. Nawafune, K. Tamaki, and N. Sugimoto
Molecularly imprinted nanocomposites for highly sensitive SPR detection of a non-aqueous atrazine sample
Analyst, 134, 80-86 2009.
299.
H. Yaku, T. Yukimasa, S. Nakano, N. Sugimoto , and H. Oka
Design of allele-specific primers and detection of the human ABO genotyping to avoid the pseudopositive problem
Electrophoresis, 29, 4130-4140 2008.
298.
H.Q. Yu, D.H. Zhang, X.B. Gu, D. Miyoshi, and N. Sugimoto
Regulation of telomerase activity by the thermodynamic stability of a DNA×RNA hybrid
Angew. Chem. Int. Ed. , 47, 9034-9038 2008 [Selected as an Inside Cover].
297.
H. Yaku, T. Yukimasa, S. Nakano, N. Sugimoto, and H. Oka
Design of allele-specific primers and detection of the human ABO genotyping to avoid the pseudopositive problem
Electrophoresis, 29, 4130-4140 2008.
296.
K. Koumoto, H. Ochiai, and N. Sugimoto
Hydration is an important factor to regulate thermodynamic stability of a DNA duplex under molecular crowding conditions
Chem. Lett., 37, 864-865 2008.
295.
T. Murashima, D. Sakiyama, D. Miyoshi, M. Kuriyama, T. Yamada, T. Miyazawa, N. Sugimoto
Cationic porphyrin induced a telomeric DNA to g-quadruplex form in water
Bioinorg Chem Appl., 294756 2008.
294.
J. Kawakami, S. Okabe, Y. Tanabe, and N. Sugimoto
Recognition of a flipped base in a hairpinloop DNA by a small peptide 
Nucleosides Nucleotides Nucleic Acids, 27, 292-308 2008.
293.
S. Nakano, T. Kirihata, and N. Sugimoto
Capture of cationic ligands bound diffusely to base pairs during the DNA refolding
Chem. Commun., 14, 700-702 2008.
292.
S. Nakano, L. Wu, H. Oka, H. Tateishi-Karimata, T. Kirihata, Y. Sato, S. Fujii, H. Sakai, M. Kuwahara, H. Sawai, and N. Sugimoto
Conformation and the sodium ion condensation on DNA and RNA structures in the presence of a neutral cosolute as a mimic of the intracellular media
Mol. Biosyst., 4, 579-588 2008.
291.
T. Yamauchi, D. Miyoshi, T. Kubodera, M. Ban, A. Nishimura, and N. Sugimoto
Riboswitches for enhancing target gene expression in eukaryotes
ChemBioChem, 9, 1040-1043 2008.
290.
G. Song, C. Chen, X. Qu, D. Miyoshi, J. Ren, and N. Sugimoto
Small-molecule-directed assembly of DNA: a gold-nanoparticle-based strategy for screening of a DNA duplex binders
Adv. Mater., 20, 706-710 2008.
289.
K. Koumoto, H. Ochiai, and N. Sugimoto
Structural effect of synthetic zwitterionic cosolutes on the stability of DNA duplexes
Tetrahedron, 64, 168-174 2008.
288.
D. Miyoshi, H. Karimata, Z.M. Wang, K. Koumoto, and N. Sugimoto
Artificial G-wire switch with 2,2’-bipyridine units responsive to divalent metal ions
J. Am. Chem. Soc., 129, 5919-5925 2007.
287.
T. Murashima, K. Hayata, Y. Saiki, J. Matsui, D. Miyoshi, T. Yamada, T. Miyazawa, and N. Sugimoto
Synthesis, structure and thermal stability of fully hydrophobic porphyrin-DNA conjugates
Tetrahedron Lett., 48, 8514-8517 2007.
286.
H. Karimata, S. Nakano, and N. Sugimoto
Effects of polyethylene glycol on DNA duplex stability different NaCl concentrations
Bull. Chem. Soc. Jpn., 80, 1987-1994 2007.
285.
D. Miyoshi, H. Karimata, and N. Sugimoto
Hydration regulates thermodynamic stability of DNA structures under molecular crowding conditions
Nucleosides Nucleotides Nucleic Acids, 26, 589-595 2007.
284.
Y. Sasaki, D. Miyoshi, and N. Sugimoto
Regulation of DNA nucleases by molecular crowding
Nucleic Acids Res., 35, 4086-4093 2007.
283.
X.B. Gu, S. Nakano, and N. Sugimoto
Consecutive GC base pairs determine the energy barrier of DNA duplex formation under molecularly crowded conditions
Chem. Commun., 2750-2752 2007.
282.
D. Miyoshi, H. Karimata, Z.-M. Wang, K. Koumoto, N. Sugimoto
Artificial G-wire switch with 2,2’-bipyridine units responsive to divalent metal ions
J. Am. Chem. Soc., 129, 5919-5925 2007.
281.
S. Nakano, T. Kirihata, S. Fujii, H. Sakai, M. Kuwahara, H. Sawai, and N. Sugimoto
Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides
Nucleic Acids Res., 35, 486-494 2007.
280.
J. Matsui, S. Goji, T. Murashima, D. Miyoshi, S. Komai, A. Shigeyasu, T. Kushida, T. Miyazawa, T. Yamada, K. Tamaki, and N. Sugimoto
Molecular imprinting under molecular crowding conditions: an aid to the synthesis of a high-capacity polymeric sorbent for triazine herbicides
Anal. Chem., 79, 1749-1757 2007.
279.
H.Q. Yu, D. Miyoshi, and N. Sugimoto
Characterization of structure and stability of long telomeric DNA G-quadruplexes
J. Am. Chem. Soc., 128, 15461-15468 2006.
278.
D. Miyoshi, H. Karimata, and N. Sugimoto
Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
J. Am. Chem. Soc., 128, 7957-7963 2006.
277.
D. Miyoshi, M. Inoue, and N. Sugimoto
DNA logic gates based on structural polymorphism of telomere DNA molecules responding to chemical input signals
Angew. Chem. Int. Ed., 45, 7716-7719 2006 [Selected as an Inside Cover].
276.
J. Kawakami, H. Tokitoh, Y. Tanabe, and N. Sugimoto
A novel stable RNA pentaloop that interacts specifically with a motif peptide of lambda-N protein
Nucleosides Nucleotides Nucleic Acids, 25, 397-416 2006.
275.
J. Matsui, T. Sodeyama, K. Tamaki, and N. Sugimoto
Molecularly-imprinted polymeric logic gates selective for predetermined chemical input species
Chem. Comm., 14, 3217-3219 2006.
274.
Y. Sasaki, D. Miyoshi, and N. Sugimoto
Effect of molecular crowding on DNA polymerase activity
Biotech. J., 1, 440-446 2006.
273.
K. Akamatsu, M. Kimura, Y. Shibata, S. Nakano, D. Miyoshi, H. Nawafune, and N. Sugimoto
A DNA duplex with extremely enhanced thermal stability based on controlled immobilization on gold nanoparticles
Nano Lett., 6, 491-495 2006.
272.
J. Matsui, T. Sodeyama, K. Tamaki, N. Sugimoto
Molecularly-imprinted polymeric logic gates selective for predetermined chemical input species
Chem. Comm., 3217-3219 2006.
271.
D. Miyoshi, H. Karimata, and N. Sugimoto
Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
J. Am. Chem. Soc., 128, 7957-7963 2006.
270.
Y. Sasaki, D. Miyoshi, and N. Sugimoto
Effect of molecular crowding on DNA polymerase activity
Biotech. J., 1, 449-446 2006.
269.
K. Akamatsu, M. Kimura, Y. Shibata, S. Nakano, D. Miyoshi, H. Nawafune, N. Sugimoto
A DNA duplex with extremely enhanced thermal stability based on controlled immobilization on gold nanoparticles
Nano Lett., 6, 491-495 2006.
268.
S. Nakano, Y. Uotani, K. Uenishi, M. Fujii, and N. Sugimoto
Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside
J. Am. Chem. Soc., 127, 518-519 2005.
267.
D. Miyoshi, H. Karimata, and N. Sugimoto
Drastic effect of a single base difference between human and Tetrahymena telomere sequences on their structures under molecular crowding conditions
Angew. Chem. Int. Ed. Engl., 44, 3740-3744 2005.
266.
T. Ohmichi, M. Kuwahara, N. Sasaki, M. Hasegawa, T. Nishikata, H. Sawai, and N. Sugimoto
Nucleic acid with guanidium modification exhibits efficient cellular uptake
Angew. Chem. Int. Ed. Engl., 44, 6682-6685 2005.
265.
J. Kawakami, H. Tokitoh, Y. Tanabe, and N. Sugimoto
Specific recognition of the basic N peptide by an RNA
Nucleic Acids Res. Symp. Ser., 49, 353-354 2005.
264.
M. Inoue, D. Miyoshi, and N. Sugimoto
Structural switch of telomere DNA by pH and monovalent cation
Nucleic Acids Res. Symp. Ser., 49, 243-244 2005.
263.
T. Kirihata, S. Nakano, S. Fujii, M. Natsumoto, M. Kuwahara, H. Sawai, and N. Sugimoto
Conformational switch of oligonucleotides induced by spermine
Nucleic Acids Res. Symp. Ser., 49, 241-242 2005.
262.
H. Karimata, D. Miyoshi, and N. Sugimoto
Structure and stability of DNA quadruplexes under molecular crowding conditions
Nucleic Acids Res. Symp. Ser., 49, 239-240 2005.
261.
D. Miyoshi, Z. M. Wang, H. Karimata, and N. Sugimoto
DNA nanowire sensitive to the surrounding condition
Nucleic Acids Res. Symp. Ser., 49, 43-44 2005.
260.
T. Ohmichi, A. Takashima, and N. Sugimoto
A nano-circular single-stranded DNA as a novel tool for SNPs detection
Nucleosides, Nucleotides, and Nucleic Acids., 24, 359-366 2005.
259.
D. Miyoshi and N. Sugimoto
Thermodynamic and kinetic analyses of nucleic acid structures for pharmacogenomics
Current Pharmacogenomics, 3, 217-236 2005.
258.
S. Nakano and N. Sugimoto
Central dogma for a molecular design based on DNA: DNB (Databasing/Designable Nanobio) ENB (Engineering Nanobio) → FNB (Functional Nanobio)
Chem. Lett., 34, 1206-1211 2005.
257.
T. Murashima, S. Tsujimoto, T. Yamada, T. Miyazawa, H. Uno, N. Ono, and N. Sugimoto
Synthesis of water-soluble porphyrine and the corresponding hughly planar benzoporphyrin without meso-substituents
Tetrahedron Lett., 46, 113-116 2005.
256.
J. Kawakami, K. Tsujita, and N. Sugimoto
Thermodynamic analysis of duplex formation of the heterochiral DNA with L-deoxyadenosine
Anal. Sci., 21, 77-82 2005.
255.
T. Yamauchi, D. Miyoshi, T. kubodera, A. Nishimura, S. Nakai, and N. Sugimoto
Roles of Mg2+ in TPP-dependent riboswitch
FEBS Lett., 579, 2583-2588 2005.
254.
J. Matsui, K. Akamatsu, N. Hara, D. Miyoshi, H. Nawafune, K. Tamaki, and N. Sugimoto
An SPR sensor chip for sensitive detection of small molecules using molecularly imprinted polymer with embedded gold nanoparticle
Anal. Chem., 77, 4282-4285 2005.
253.
S. Nakano, Y. Uotani, K. Uenishi, M. Fujii, and N. Sugimoto
DNA base flipping by a base pair-mimic nucleoside
Nucleic Acids Res., 33, 7111-7119 2005.
252.
T. Ohmichi, Y. Kawamoto, P. Wu, D. Miyoshi, H. Karimata, and N. Sugimoto
DNA-based biosensor for monitoring pH in vitro and in living cells
Biochemistry, 44, 7125-7130 2005.
251.
D. Miyoshi, H. Karimata, and N. Sugimoto
Drastic effect of a single base difference between human and tetrahymena telomere sequence on their structures under molecular crowding conditions
Angew. Chem. Int. Ed. Engl., 44, 3740-3744 2005.
250.
T. Ohmichi, M. Kuwahara, N. Sasaki, M. Hasegawa, T. Nishikata, H. Sawai, and N. Sugimoto
Nucleic acid with guanidium modification exhibits efficient cellular uptake
Angew. Chem. Int. Ed. Engl., 44, 2-6 2005.
249.
S. Nakano, Y. Uotani, K. Uenishi, M. Fujii, and N. Sugimoto
Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside
J. Am. Chem. Soc., 127, 4350-4353 2005.
248.
S. Nakano, Y. Uotani, Y. Anno, M. Fujii, and N. Sugimot
Conformational change of a nucleotide by a base-pair mimic nucleoside in the complementary DNA strand
Nucleic Acids Res. Symp. Ser., 4, 259-260 2004.
247.
J. Kawakami, C. Maiya, and N. Sugimoto
Analysis of the secondary structure of a ribozyme that requires his as a cofactor
Nucleic Acids Res. Symp. Ser., 4, 203-204 2004.
246.
T. Kirihata, S. Nakano, and N. Sugimoto
Secondary structure change of oligonucleotide induced by salts
Nucleic Acids Res. Symp. Ser., 4, 109-110 2004.
245.
H. Karimata, S. Nakano, T. Ohmichi, J. Kawakami, and N. Sugimoto
Stabilization of a DNA duplex under molecular crowding condition of PEG
Nucleic Acids Res. Symp. Ser., 4, 107-108 2004.
244.
J. Kawakami, Z. M. Wang, H. Fujiki, S. Izumi, and N. Sugimoto
Introduction of peptide function into DNA by nucleic acid peptides, NAPs
Chem. Let., 33, 1554-1555 2004.
243.
S. Nakano, H. Karimata, T. Ohmichi, J. Kawakami, and N. Sugimoto
The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability
J. Am. Chem. Soc., 126, 14330-14331 2004.
242.
S. Nakano, T. Kanzaki, and N. Sugimoto
Influence of ribonucleotide on a duplex conformation and its thermal stability: study with the chimeric RNA-DNA strands
J. Am. Chem. Soc., 126, 1088-1095 2004.
241.
D. Miyoshi, S. Matsumura, S. Nakano, and N. Sugimoto
Duplex dissociation of telomere DNAs induced by molecular crowding
J. Am. Chem. Soc., 126, 165-169 2004.
240.
J. Kawakami, Z.M. Wang, H. Fujiki, S. Izumi, and N. Sugimoto
Introduction of peptide function into DNA by nucleic acid peptides, NAPs
Chem Let., 33, 1554-1555 2004.
239.
J. Matsui, N. Minamimura, K. Nishimoto, K. Tamaki, and N. Sugimoto
Synthetic cinchonidine receptors obtained by cross-linking linear poly (methacrylic acid) derivatives as an alternative molecular imprinting technique
J. Chromatogr., 804, 223-229 2004.
238.
J. Matsui, N. Minamimura, K. Nishimoto, K. Tamaki, and N. Sugimoto
Synthetic cinchonidine receptors obtained by cross-linking linear poly (methacrylic acid) derivatives as an alternative molecular imprinting technique
J. Chromatogr. B, 824, 223-229 2004.
237.
C. Nakamura, S. Takeda, M. Kageshima, M. Ito, N. Sugimoto, K. Sekizawa, and J. Miyake
Mechanical force analysis of peptide interactions using atomic force microscopy
Biopolymers, 76, 48-54 2004.
236.
J. Matsui, K. Akamatsu, S. Nishiguchi, D. Miyoshi, H. Nawafune, K. Tamaki, and N. Sugimoto
Composite of Au nanoparticle and molecularly imprinted polymer as a sensing material
Anal. Chem., 76, 1310-1315 2004.
235.
S. Nakano, T. Kanzaki, and N. Sugimoto
Influence of ribonucleotide on a duplex conformation and its thermal stability: study with the chimeric RNA-DNA strands
J. Am. Chem. Soc., 126, 1088-1095 2004.
234.
D. Miyoshi, S. Matsumura, S. Nakano, and N. Sugimoto
Dupelex dissociation of telomere DNAs induced by molecular crowding
J. Am. Che. Soc., 126, 165-169 2004.
233.
T. Omichi, A. Takashima, and N. Sugimoto
A nano-circular single-stranded DNA works as a novel tool for cell-free peputide synthesis and detection of SNPs
Biomolecular chemistry, Proc., ISBC 2003, 335 2003.
232.
S. Nakano, Y. Uotani, and N. Sugimoto
An oligopeptide containing the C-terminal sequence of RNase A inhibits RNA hydrolysis by RNase A
Biomolecular chemistry, Proc., ISBC 2003, 240-241 2003.
231.
W. Li, D. Miyoshi, S. Nakano, and N. Sugimoto
Structural competition involving G-quadruplex DNA and its complement
Biochemistry, 42, 11736-11744 2003.
230.
T. Ohmichi, A. Takashima, and N. Sugimoto
A novel approach of cell-free peptide synthesis and SNPs detection using non-circular single-stranded DNA
Nucleic Acids Res. Suppl., 3, 311-312 2003.
229.
N. Sugimoto
Beyond the Watson-Crick double helix: design of functional nucleic acids in silico, in tube, and in cell
Nucleic Acids Res. Suppl., 3, 211-212 2003.
228.
Y. Uotani, S. Nakano, S. Nakashima, Y. Anno, M. Fujii, and N. Sugimoto
Large stacking stability of a base pair-mimic nucleotide on the DNA duplex
Nucleic Acids Res. Suppl., 3, 79-80 2003.
227.
S. Nakano and N. Sugimoto
An oligopeptide caontaining the C-terminal sequence of RNase A has a potent RNase A binding property
J. Am. Chem. Soc., 125, 8728-8729 2003.
226.
S. Nakano, Y. Uotani, S. Nakashima, Y. Anno, M. Fujii, and N. Sugimto
Large stabilization of a DNA duplex by the deoxyadenosine derivatives tethering an aromatic hydrocarbon group
J. Am. Chem. Soc., 125, 8086-8087 2003.
225.
W. Li, D. Miyoshi, S. Nakano, and N. Sugimoto
Structural competition involving G-quadruplex DNA and its complement
Biochemistry, 42, 11736-11744 2003.
224.
Y. Okumoto, H. Fujiki, J. Kawakami, S. Nakashima, S. Nakano, T. Ohmichi, D. Miyoshi, and N. Sugimoto
Novel biomaterials derived from deoxyribozyme and NAPzyme
Macromol. Chem. Pys. Macromol. Symp., 201, 245-252 2003.
223.
D. Miyoshi, A. Nakao, and N. Sugimoto
Effect of putrescine and PEG on a structural transition of DNA G-quadruplex
Nucleosides, Nucleotides, and Nucleic Acids., 22, 1591-1594 2003.
222.
D. Miyoshi, S. Matsumura, W. Li, and N. Sugimoto
Structural polymorphism of telomeric DNA regulated by pH and divalent cation
Nucleosides, Nucleotides, and Nucleic Acids., 22, 203-221 2003.
221.
D. Miyoshi, A. Nakao, and N. Sugimoto
Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+
Nucleic Acids Res., 31, 1156-1163 2003.
220.
Y. Okumoto, Y. Tanabe, and N. Sugimoto
Factors that contribute to efficient catalytic activity of a small Ca2+-dependent deoxyribozyme in relation its RNA cleavage function
Biochemistry, 42, 2158-2165 2003.
219.
D. Miyoshi, A. Nakao, and N. Sugimoto
Molecular crowding regulates the structural switch of the DNA G-quadruplex
Biochemistry, 41, 15017-15024 2002.
218.
T. Kanzaki, S. Nakano, and N. Sugimoto
Role of 2’-OH on thermodynamic stability and structure of chimeric oligonucleotides
Nucleic Acids Res. Supple., 2, 189-190 2002.
217.
T. Ohmichi, H. Karimata, and N. Sugimoto
Effect of secondary structure of short double-stranded RNA on RNAi efficiency
Nucleic Acids Res. Supple., 2, 63-64 2002.
216.
C. Nakamura, S. H. Song, S. M. Change, N. Sugimoto, and J. Miyake
Quartz crystal microbalance sensor targeting low molecular weight compounds using oligopeptide binder and peptide-immobilized latex beads
Anal. Chem. Acta., 469, 183-188 2002.
215.
T. Ohmichi, S. Nakano, D. Miyoshi, and N. Sugimoto
Long RNA dangling end has large energetic contribution to duplex stability
J. Am. Chem. Soc., 124, 10367-10372 2002.
214.
D. Miyoshi, A. Nakao, and N. Sugimoto
Molecular crowding regulates the structural switch of the DNA G-quadruplex
Biochemistry, 41, 15017-15024 2002.
213.
C. Nakamura, S. H. Song, S. M. Change, N. Sugimoto, and J. Miyake
Quartz crystal microbalance sensor targeting low molecular weight compounds using oligopeptide binder and peptide-immobilized latex beads
Anal. Chem. Acta., 469, 183-188 2002.
212.
W. Li, P. Wu, T. Ohmichi, and N. Sugimoto
Characterization and thermodynamic properties of quadruplex/duplex competition.
FEBS Lett., 526, 77-81 2002.
211.
J. Matsui, K. Tamaki, and N. Sugimoto
Molecular imprinting in alcohols: utility of a pre-polymer based strategy for synthesizing stereoselective artificial receptor polymers in hydrophilic media
Anal. Chem. Acta., 466, 11-15 2002.
210.
P. Wu, Y. Kawamoto, H. Hara, and N. Sugimoto
Effect of divalent cations and cytosine protonation on thermodynamic properties of intermolecular DNA double and triple helices
J. Inorg. Biochem., 91, 277-285 2002.
209.
P. Wu, S. Nakano, and N. Sugimoto
Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation
Eur. J. Biochem., 269, 2821-2830 2002.
208.
Y. Okumoto, T. Ohmichi, and N. Sugimoto
Immobilized small deoxyribozyme to distinguish RNA secondary structures
Biochemistry, 41, 2769-2773 2002.
207.
J. Zou, K. Kajita, and N. Sugimoto
Cu2+ inhibits the aggregation of amyloid β-peptide(1-42) in vitro
Angew. Chem. Int. Ed. Engl., 40, 2274-2277 2001.
206.
C. Nakamura, Y. Inuyama, K. Shirai, N. Sugimoto, and J. Miyake
Detection of porphyrin using a short peptide immobilized on a surface plasmon resonance sensor chip
Biosensors & Bioelectronics, 16, 1095-1100 2001.
205.
D. Miyoshi, A. Nakao, and N. Sugimoto
Structural transition of d(G4T4G4) from antiparallel to parallel G-quartet induced by divalent cations
Nucleic Acids Res. Supple., 1, 259-260 2001.
204.
P. Wu, H. Hara, Y. Kawamoto, and N. Sugimoto
Effect of cytosine protonation and cation on thermodynamic properties of parallel DNA triplex family
Nucleic Acids Res. Supple., 1, 39-40 2001.
203.
T. Ohmichi, M. Nakamura, and N. Sugimoto
Development of ribozyme synthesis system using a rolling-synchronization: Effect of template DNA secondary structure on recognition of RNA polymerase
Nucleic Acids Res. Supple., 1, 37-38 2001.
202.
J. Kawakami, H. Kamiya, K. Yasuda, H. Fujiki, H. Kasai, and N. Sugimoto
Thermodynamic stability of base pairs between 2-hydroxyadenine and incoming nucleotides as a determinant of nucleotide incorporation specificity during replication
Nucleic Acids Res., 29, 3289-3296 2001.
201.
N. Sugimoto, P. Wu, H. Hara, and Y. Kawamoto
pH and cation effects on the properties of parallel pyrimidine motif DNA triplexes
Biochemistry, 40, 9396-9405 2001.
200.
N. Sugimoto, N. Satoh, K. Yasuda, and S. Nakano
Stabilization factors affecting duplex formation of peptide nucleic acid with DNA
Biochemistry, 40, 8444-8451 2001.
199.
M. Katano, A. Yamada, K. Tanaka, J. Murakami, K. Taira, J. Kawakami, N. Sugimoto, and T. Nishikata
Utilization of ribozymes for loss-of-function analyses of the early development of the ascidian Ciona intestinalis
Mem. Konan Univ. Sci. Eng. Ser., 48, 11-20 2001.
198.
J. Zou, K. Kajita, and N. Sugimoto
Cu2+ inhibits the aggregation of amyloid β-peptide(1-42) in vitro
Angew. Chem. Int. Ed. Engl., 40, 2274-2277 2001.
197.
D. Miyoshi, A. Nakao, T. Toda, and N. Sugimoto
Effect of divalent cations on antiparallel G-quartet structure of d(G4T4G4)
FEBS Lett., 496, 128-133 2001.
196.
N. Sugimoto
DNA recognition of a 24-mer peptide derived from RecA protein
Biopolymers (Peptide Science), 55, 416-424 2001.
195.
J. Zou and N. Sugimoto
Effect of extending the CD reference spectra to 168 nm on the prediction of protein secondary structures
J. Biochem. Mol. Biol. Biophy., 5, 15-24 2001.
194.
J. Kawakami, M. Yoneyama, D. Miyoshi, and N. Sugimoto
A stable DNA tetraloop and its structural tolerance for modification
Chem. Lett., 258-259 2001.
193.
T. Ohmichi, H. Nakamuta, K. Yasuda, and N. Sugimoto
Kinetic property of bulged helix formation: analysis of kinetic behavior using nearest-neighbor parameters
J. Am. Chem. Soc., 122, 11286-11294 2000.
192.
N. Sugimoto and T. Ohmichi
Ribozyme - metal ion interaction
Rep. Prog. Poly. Phys. Jpn., 43, 897-910 2000.
191.
J. Zou and N. Sugimoto
Complexation of peptide with Cu2+ responsible to inducing and enhancing the formation of α-helix conformation
BioMetals, 13, 349-359 2000.
190.
N. Sugimoto, D. Miyoshi, and J. Zou
Development of small peptides recognizing a monosaccharide by combinatorial chemistry
Chem. Commun., 2295-2296 2000.
189.
P. Wu and N. Sugimoto
Transition characteristics and thermodynamic analysis of DNA duplex formation: a quantitative consideration for the extent of duplex association
Nucleic Acids Res., 28, 4762-4768 2000.
188.
T. Ohmichi, H. Nakamuta, K. Yasuda, and N. Sugimoto
Kinetic property of bulged helix formation: analysis of kinetic behavior using nearest-neighbor parameters
J. Am. Chem. Soc., 122, 11286-11294 2000.
187.
Y. Okumoto and N. Sugimoto
Development of a novel functional biosensor with a short Ca2+-dependent deoxyribozyme
Nucleic Acids Symp. Ser., 44, 79-80 2000.
186.
P. Wu and N. Sugimoto
New thermodynamic characterization and transition mechanism of DNA duplex formation
Nucleic Acids Symp. Ser., 44, 15-16 2000.
185.
J. Kawakami, H. Imanaka, Y. Yokota, and N. Sugimoto
In vitro selection of aptamers that act with Zn2+
J. Inorg. Biochem., 82, 197-206 2000.
184.
Y. Okumoto and N. Sugimoto
Effects of metal ions and catalytic loop sequence on the complex formation of a deoxyribozyme and its RNA substrate
J. Inorg. Biochem., 82, 189-195 2000.
183.
J. Zou and N. Sugimoto
A role of the Trp-his interaction in the conformational switch between a-helix and b-sheet in short alanine-based peptides
J. Chem. Soc. Perkin Trans., 2, 2135-2140 2000.
182.
N. Sugimoto, M. Nakano, and S. Nakano
Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes
Biochemistry, 39, 11270-11281 2000.
181.
J. Zou and N. Sugimoto
Effect of copper ion on conformations of short alanine-based peptides with single Trp/His stacking interactions
Protein and Peptide Lett., 6, 373-378 1999.
180.
N. Sugimoto and T. Toda
Effect of DNA sequences on its catalytic activity for porphyrin metallation
Rep. Prog. Poly. Phys. Jpn., 42, 573-576 1999.
179.
N. Sugimoto and N. Sato
Thermodynamic stabilities of the short PNA/DNA hybrid duplexes
Rep. Prog. Poly. Phys. Jpn., 42, 569-572 1999.
178.
N. Sugimoto and H. Kazuta
Fishing out tryptophan selective peptides from combinatorial library
Rep. Prog. Poly. Phys. Jpn., 42, 565-568 1999.
177.
N. Sugimoto and Y. Okumoto
RNA cleavage by a short catalytic DNA
Rep. Prog. Poly. Phys. Jpn., 42, 561-564 1999.
176.
J. Zou and N. Sugimoto
Stabilization of the α-helix conformation of short peptides
Rep. Prog. Poly. Phys. Jpn., 42, 511-514 1999.
175.
N. Sugimoto and Y. Okumoto
Development of a short Ca2+-dependent deoxyribozyme with RNA cleavage activity
Nucleic Acids Symp. Ser., 42, 281-282 1999.
174.
N. Sugimoto, S. Okabe, and M. Yoneyama
Combinatorial approach to development of peptides that recognize DNA tetraloops
Nucleic Acids Symp. Ser., 42, 179-180 1999.
173.
N. Sugimoto, K. Yamamoto, and N. Satoh
Positional effect of single bulge nucleotide on PNA (peptide nucleic acid)/DNA hybrid stability
Nucleic Acids Symp. Ser., 42, 95-96 1999.
172.
N. Sugimoto, N. Satoh, and K. Yamamoto
Comparison of thermodynamic stabilities between PNA (peptide nucleic acid)/DNA hybrid duplexes and DNA/DNA duplexes
Nucleic Acids Symp. Ser., 42, 93-94 1999.
171.
K. Yasuda, J. Kawakami, and N. Sugimoto
Development of new biotechnology for the 21st century (II) —structural and thermodynamic studies of PNA/DNA hybrids containing single bulge nucleotides—
Mem. Konan Univ. Sci. Ser., 46, 61-69 1999.
170.
J. Zou and N. Sugimoto
Development of new biotechnology for the 21st century (I) —role of side-chain interactions of peptides in some neurodegenerative diseases—
Mem. Konan Univ. Sci. Ser., 46, 49-60 1999.
169.
J. Kawakami, T. Kitano, and N. Sugimoto
A selection of short peptides that interact with a porphyrin as a small target by immobilized phage display
Chem. Commun., 1765-1766 1999.
168.
S. Nakano, M. Fujimoto, H. Hara, and N. Sugimoto
Nucleic acid duplex stability: influence of base composition on cation effects
Nucleic Acids Res., 27, 2957-2965 1999.
167.
N. Sugimoto, Y. Okumoto, and T. Ohmichi
Effect of metal ions and sequence of deoxyribozymes on their RNA cleavage activity
J. Chem. Soc. Perkin Trans., 2, 1381-1386 1999.
166.
N. Sugimoto, J. Zou, H. Kazuta, and D. Miyoshi
a-b structural transition of short oligopeptides by water/organic solvent titration
Chem. Lett., 637-638 1999.
165.
N. Sugimoto, H. Kazuta, J. Zou, and D. Miyoshi
A novel screening method for combinatorial chemistry for low affinity interactions
Chem. Commun., 677-678 1999.
164.
N. Sugimoto, H. Kazuta, and D. Miyoshi
Selection of peptides that recognize tryptophan by combinatorial chemistry
Peptide Science, 281-284 1999.
163.
T. Ohmichi, Y. Okumoto, and N. Sugimoto
Effect of substrate RNA sequence on the cleavage reaction by a short ribozyme
Nucleic Acids Res., 26, 5655-5661 1998.
162.
N. Sugimoto and S. Nakano
Effect of cation concentration on duplex stability of nucleic acids with unnatural base pairs
Nucleic Acids Symp. Ser., 39, 121-122 1998.
161.
J. Kawakami, K. Tsujita, and N. Sugimoto
Stability of DNA duplexes containing mirror-image DNA
Nucleic Acids Symp. Ser., 39, 55-56 1998.
160.
S. Nakano and N. Sugimoto
Single-stranded DNA recognition of a 24-mer peptide derived from RecA protein
Bull. Chem. Soc. Jpn., 71, 2205-2210 1998.
159.
N. Sugimoto, T. Toda, and T. Ohmichi
Reaction field for efficient porphyrin metallation catalysis produced by self-assembly of a short DNA oligonucleotide
Chem. Commun., 1533-1534 1998.
158.
N. Sugimoto, I. Hirai, and T. Ohmichi
Model reaction between TAR RNA and Tat protein in HIV
Rep. Prog. Poly. Phys. Jpn., 41, 663-666 1998.
157.
N. Sugimoto and M. Fujimoto
Stability of internal single A•A mismatches in RNA/DNA hybrids
Rep. Prog. Poly. Phys. Jpn., 41, 659-662 1998.
156.
N. Sugimoto and K. Aoki
Thermodynamic stability of DNA triple helixes
Rep. Prog. Poly. Phys. Jpn., 41, 655-658 1998.
155.
J. Kawakami, Y. Kawase, and N. Sugimoto
In vitro selection of aptamers that recognize a monosaccharide
Anal. Chem. Acta., 365, 95-100 1998.
154.
N. Sugimoto and N. Wakizaka
Effect of Cu2+ on complex formation between a deoxyribozyme and its substrates
Nucleosides & Nucleotides, 17, 565-574 1998.
153.
奥本泰秀, 川上純司, 杉本直己
生命関連分子の微視的相互作用 (3) RNA鎖を切断するデオキシリボザイムと金属イオンの関係
甲南大学紀要 理学編, 45, 125-133 1998.
152.
杉本直己
生命関連分子の微視的相互作用 (4)ミスマッチを含むRNA/DNAハイブリッドの安定性に及ぼすミスマッチの離接塩基対の影響
甲南大学紀要 理学編, 45, 135-143 1998.
151.
T. Ohmichi and N. Sugimoto
Roles of 2’-hydroxyls of leadzyme on an RNA cleavage
Bull. Chem. Soc. Jpn., 70, 2743-2747 1997.
150.
N. Sugimoto and S. Nakano
Sandwiching interaction of peptides with a porphyrin
Chem. Lett., 939-940 1997.
149.
N. Sugimoto and S. Nakano
A 24 mer peptide derived from RecA protein can discriminate a single-stranded DNA from a double-stranded DNA
Chem. Commun., 2125-2126 1997.
148.
N. Sugimoto and T. Ohmichi
Effect of nucleotide sequence and metal ions at the active site on a short ribozyme activation
Nucleic Acids Symp. Ser., 37, 299-300 1997.
147.
J. Kawakami and N. Sugimoto
Evolution of a phosphorothioate RNA library during in vitro selection
Nucleic Acids Symp. Ser., 37, 201-202 1997.
146.
N. Sugimoto, I. Yasumatsu, and M. Fujimoto
Stabilities of internal rU-dG and rG-dT pairs in RNA/DNA hybrids
Nucleic Acids Symp. Ser., 37, 199-200 1997.
145.
N. Sugimoto, S. Nakano, and M. Fujimoto
Experimental quantitation of cation effect on nucleic acid stability
Nucleic Acids Symp. Ser., 37, 147-148 1997.
144.
N. Sugimoto and M. Fujimoto
Stability of internal G•T mismatches in RNA/DNA hybrids
Rep. Prog. Poly. Phys. Jpn., 40, 665-668 1997.
143.
N. Sugimoto and Y. Okumoto
Stability of the duplexes between a peptide nucleic acid and DNA
Rep. Prog. Poly. Phys. Jpn., 40, 661-664 1997.
142.
N. Sugimoto and K. Aoki
Effect of cation concentration on stability of short DNA triplexes
Rep. Prog. Poly. Phys. Jpn., 40, 657-660 1997.
141.
T. Ohmichi and N. Sugimoto
Role of Nd3+ and Pb2+ on the RNA cleavage reaction by a small ribozyme
Biochemistry, 36, 3514-3521 1997.
140.
三好大輔, 鄒晉, 川上純司, 杉本直己
生命関連分子の微視的相互作用(Ⅱ)ペプチドの分子内α-へリックスと分子間β-シートの構造遷移
甲南大学紀要 理学編, 44, 17-26 1996.
139.
N. Sugimoto and S. Nakano
Development of new SPR chip with an oligopeptide recognizing a single-stranded DNA
Nucleic Acids Symp. Ser., 35, 303-304 1996.
138.
N. Sugimoto and N. Wakizaka
Effect of metal ions on DNA ligation catalyzed by a deoxyribozyme
Nucleic Acids Symp. Ser., 35, 191-192 1996.
137.
N. Sugimoto and T. Ohmichi
The role of different metal ions on the cleavage of a substrate RNA catalyzed by a small chimeric ribozyme
Nucleic Acids Symp. Ser., 35, 189-190 1996.
136.
N. Sugimoto, I. Yasumatsu, Y. Shoji, W. Iwatani, N. Tamura, J. Shimada, and Y. Mizushima
Relationship between antiviral effect of antisense oligonucleotides against HSV-1 mRNA precursor and stability of the RNA/DNA complexes
Nucleic Acids Symp. Ser., 35, 175-176 1996.
135.
N. Sugimoto, S. Nakano, M. Yoneyama, and K. Honda
Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes
Nucleic Acids Res., 24, 4501-4505 1996.
134.
N. Sugimoto and T. Ohmichi
Site-specific cleavage reaction catalyzed by leadzyme is enhanced by combined effect of lead and rare earth ions
FEBS Lett., 393, 97-100 1996.
133.
N. Sugimoto and T. Shinohara
Stability of G•A mismatches in RNA/DNA hybrids and DNA double helices
Rep. Prog. Poly. Phys. Jpn., 39, 675-678 1996.
132.
N. Sugimoto and M. Yoneyama
Stability of long dangling ends on RNA double helices
Rep. Prog. Poly. Phys. Jpn., 39, 671-674 1996.
131.
N. Sugimoto and T. Nagakawa
Stability of long RNA/DNA hybrids
Rep. Prog. Poly. Phys. Jpn., 39, 667-670 1996.
130.
N. Sugimoto, S. Nakano, M. Katoh, M. Sasaki, and S. Kugimiya
Interactions of 5-(1-pyrenyl)-10,15,20-tris(4-methylpyridinium)porphine with double-helix and triple-helix nucleic acids
Nucleosides & Nucleotides, 15, 743-747 1996.
129.
N. Sugimoto, T. Ohmichi, and M. Sasaki
The stability of DNA and RNA G-quartets
Nucleosides & Nucleotides, 15, 559-567 1996.
128.
P. C. Bevilacqua, N. Sugimoto, and D. H. Turner
A mechanistic framework for the second step of splicing catalyzed by the Tetrahymena ribozyme
Biochemistry, 35, 648-658 1996.
127.
楢木泰俊彦, 川上純司, 杉本直己
生命関連分子の微視的相互作用 I. バルジを含むDNA二重らせんの熱力学的安定性に及ぼすイノシン置換の影響
甲南大学紀要 理学編, 43, 37-47 1996.
126.
N. Sugimoto, S. Nakano, M. Yoneyama, H. Nakamuta, T. Ohmichi, and M. Sasaki
Thermodynamic stability of RNA/DNA hybrids
J. Biomolec. Struct. Dynam., 12, a233 1995.
125.
N. Sugimoto, S. Nakano, M. Katoh, A. Matsumura, H. Nakamuta, T. Ohmichi, M. Yoneyama, and M. Sasaki
Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes
Biochemistry, 34, 11211-11216 1995.
124.
H. Ide, H. Shimizu, Y. Kimura, S. Sakamoto, K. Makino, M. Glackin, S. Wallace, H. Nakamuta, M. Sasaki, and N. Sugimoto
Influence of a-deoxyadenosine on the stability and structure of DNA. Thermodynamic and molecular mechanics studies
Biochemistry, 34, 6947-6955 1995.
123.
H. Ide, H. Murayama, S. Sakamoto, K. Makino, K. Honda, H. Nakamuta, M. Sasaki, and N. Sugimoto
On the mechanism of preferential incorporation of dAMP at abasic sites in translational DNA synthesis. Role of proofreading activity of DNA polymerase and thermodynamic characterization of model template-primers containing an abasic site
Nucleic Acids Res., 23, 123-129 1995.
122.
N. Sugimoto, M. Yoneyama, and M. Sasaki
Energetics of oligodeoxyribonucleotides with 5-methylcytosine
Rep. Prog. Poly. Phys. Jpn., 38, 695-698 1995.
121.
N. Sugimoto, H. Nakamuta, and M. Sasaki
Energetics of oligodeoxyribonucleotides with a bulge
Rep. Prog. Poly. Phys. Jpn., 38, 691-694 1995.
120.
杉本直己, 中野修一, 米山麻理, 佐々木宗夫
核酸の機能と構造に関する微視的相互作用XI.DNAの一本鎖部位の安定性とペプチド認識における役割
甲南大学紀要 理学編, 42, 37-43 1995.
119.
T. Ohmichi, M. Sasaki, and N. Sugimoto
Regulation of leadzyme (lead-dependent ribozyme) reaction by amino acids and rare earth ions
Nucleic Acids Symp. Ser., 34, 227-228 1995.
118.
T. Tanaka, Y. Kurihara, T. Sakamoto, M. Furusawa, A. Kobayashi, M. Katahira, K. Takeuchi, N. Sugimoto, and S. Uesugi
Structure of translation initiation region of c-myc mRNA and thermostability of the c-myc mRNA/antisense ODN complex
Nucleic Acids Symp. Ser., 34, 135-136 1995.
117.
H. Ide, H. Ikeda, K. Makino, M. Sasaki, and N. Sugimoto
Structure and stability of DNA containing a-deoxyadenosine
Nucleic Acids Symp. Ser., 34, 81-82 1995.
116.
S. Nakano, M. Sasaki, and N. Sugimoto
Interaction of oligonucleotides with a single stranded DNA binding site of RecA protein
Nucleic Acids Symp. Ser., 34, 61-62 1995.
115.
N. Sugimoto
Thermdynamics of RNA/DNA hybrid formation
Tracing Biological Evolution in Protein and Gene Structures (Elsevier Science), 135-147 1995.
114.
N. Sugimoto, M. Katoh, S. Nakano, T. Ohmichi, and M. Sasaki
RNA/DNA hybrid duplexes with identical nearest-neighbor base-pairs have identical stability
FEBS Lett., 354, 74-78 1994.
113.
N. Sugimoto, T. Ohmichi, and M. Sasaki
Effect of Na+ and K+ ions on the stability of DNA G-quartet
Rep. Prog. Poly. Phys. Jpn., 37, 823-824 1994.
112.
N. Sugimoto, H. Nakamuta, and M. Sasaki
Thermodynamic study of RNA・DNA hybrids, (rA)8•(dT)8 and (dA)8•(rU)8
Rep. Prog. Poly. Phys. Jpn., 37, 819-822 1994.
111.
H. Nawafune, S. Mizumoto, Y. Kohashi, and N. Sugimoto
The study of biomodel solution containing various salts: fourier transform infrared attenuated total reflectance (FTIR ATR) spectrometry of phosphate-family solution
Rep. Prog. Poly. Phys. Jpn., 37, 815-818 1994.
110.
N. Sugimoto, H. Nakamuta, and M. Sasaki
Dynamic behaviors of DNA double helix containing a bulged nucleotide
Nucleic Acids Symp. Ser., 31, 301-302 1994.
109.
N. Sugimoto, K. Honda, and M. Sasaki
Application of the thermodynamic parameters of DNA stability prediction to double-helix formation of deoxyribooligonucleotides
Nucleosides & Nucleotides, 13, 1311-1317 1994.
108.
杉本直己, 大道達雄, 中牟田裕行, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関する微視的相互作用X 連続配列をもつ核酸の特異的構造とその安定性
甲南大学紀要 理学編, 41, 23-30 1994.
107.
縄舟秀美, 水本省三, 小橋康人, 杉本直己, 芳賀正記
FTIR ATR法による無電解パラジウム-リン合金めっき浴中の浴成分のモニタリング
表面技術, 45, 85-87 1994.
106.
N. Sugimoto, H. Kawai, and M. Sasaki
Secondary structures of wild-type and mutant hairpin ribozymes
Rep. Prog. Poly. Phys. Jpn., 36, 725-728 1993.
105.
N. Sugimoto, T. Ohmichi, A. Tanaka, A. Matsumura, and M. Sasaki
Stability of the TAR RNA and its complex with arginine
Nucleic Acids Symp. Ser., 29, 167-168 1993.
104.
N. Sugimoto, A. Matsumura, H. Kawai, and M. Sasaki
Effect of GA and AA mismatches on interaction between substrate RNA and active site of ribozyme
Chemistry Express, 8, 613-616 1993.
103.
N. Sugimoto, M. Sasaki, and A. Tanaka
Relationship between catalytic activity and secondary structure of a hammerhead ribozyme: a study using thermodynamic parameters for RNA structure prediction
Supramol. Chem., 2, 99-102 1993.
102.
N. Sugimoto, Y. Shintani, M. Katoh, and M. Sasaki
Effect of berenil on stability of double-helix of octamers of deoxyriboadenylic and deoxyribothymidylic acids
Chemistry Express, 8, 313-316 1993.
101.
N. Sugimoto, A. Matsumura, and M. Sasaki
Effect of GA and AA mismatches on RNA double helix
Chemistry Express, 8, 309-312 1993.
100.
M. Sasaki, S. Tanaka, N. Sugimoto, and T. Sugano
Inclusion kinetics of p-(3-methylsalicylazo)benzenesulfonate into a-cyclodextrin
Chemistry Express, 8, 137-140 1993.
99.
N. Sugimoto, H. Kawai, and M. Sasaki
Secondary structures of wild-type and mutant hairpin ribozymes
Rep. Prog. Poly. Phys. Jpn., 36, 725-728 1993.
98.
杉本直己, 加藤美佐, 河井秀樹, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用IX.RNAの二次構造安定性へのダングリング・エンドとヘアピン・ループ部位の寄与
甲南大学紀要 理学編, 40, 83-92 1993.
97.
H. Satake, S. Takeda, A. Matsumura, M. Sasaki, N. Sugimoto, and Y. Wataya
Action of 5-trifluoromethyl-2’-deoxyuridine on DNA synthesis
Nucleic Acids Symp. Ser., 27, 189-190 1992.
96.
N. Sugimoto, A. Matsumura, M. Katoh, and M. Sasaki
Double-helix formation of self-complementary chimeric oligonucleotides r(CG)n d(CG)3-n (n=0, 1, 2, 3)
Nucleic Acids Symp. Ser., 27, 139-140 1992.
95.
N. Sugimoto, K. Honda, and M. Sasaki
Kinetics and thermodynamics of double-helix, formation of self-complementary deoxyribooctanucleotides d(TCTATAGA) and d(TAGATCTA)
Nucleic Acids Symp. Ser., 27, 129-130 1992.
94.
T. Shimayama, S. Sawata, M. Komiyama, Y. Takagi, Y. Tanaka, A. Wada, N. Sugimoto, J. J. Rossi, F. Nishikawa, S. Nishikawa, and K. Taira
Substitution of non-catalytic stem and loop regions of hammerhead ribozyme with DNA counterparts only increases KM without sacrificing the catalytic step (kcat): a way to improve substrate-specificity
Nucleic Acids Symp. Ser., 27, 17-18 1992.
93.
N. Sugimoto, A. Matsumura, and M. Sasaki
Melting kinetics of self-complementary double-helix by a fluorescent oligonucleotide AUGCAUeA
Rep. Prog. Poly. Phys. Jpn., 35, 745-746 1992.
92.
N. Sugimoto, M. Katoh, Y. Shintani, and M. Sasaki
Effects of dimidium and ethidium on melting of double-helix by octamers of deoxyriboadenylic and deoxyribothymidylic acids
Rep. Prog. Poly. Phys. Jpn., 35, 741-744 1992.
91.
N. Sugimoto, H. Kawai, and M. Sasaki
Stability of right-handed and left-handed double-helices of self-complementary hexanucleotide CGCGCG
Chemistry Express, 7, 493-496 1992.
90.
N. Sugimoto, A. Matsumura, M. Sasaki, H. Satake, S. Takeda, and Y. Wataya
Stability of double-helix by deoxyribooligonucleotides containing 5-trifluoro-methyluracil and 5-cyanouracil
Chemistry Express, 7, 405-408 1992.
89.
N. Sugimoto and M. Sasaki
Melting behavior and stability of (dA)8•(dT)8 double helix
Nucleosides & Nucleotides, 11, 515-520 1992.
88.
N. Sugimoto, K. Honda, and M. Sasaki
Kinetics of double-helix melting of self-complementary deoxyribooctanucleotid d(TATGCATA)
Chemistry Express, 7, 325-328 1992.
87.
N. Sugimoto, Y. Shintani, M. Sasaki, and M. Okamoto
Temperature and pressure effects on equilibrium of double-helix to single-strands by octamers of deoxyriboadenylic and deoxyribothymidylic acids
Chemistry Express, 7, 273-276 1992.
86.
N. Sugimoto, K. Hasegawa, and M. Sasaki
Effect of base-triplet formation on binding of tetrakis(1-methyl-4-pyridyl)porphine with poly(A)•poly(U)
Chemistry Express, 7, 61-64 1992.
85.
N. Sugimoto, N. Monden, and M. Sasaki
Salt effects on binding of propidium with poly(A)•poly(U) and poly(I)•poly(C)
Chemistry Express, 7, 57-60 1992.
84.
N. Sugimoto, Y. Shintani, A. Tanaka, and M. Sasaki
Thermodynamics of triple-helix and double-helix formations by octamers of deoxyriboadenylic and deoxyribothymidylic acids
Bull. Chem. Soc. Jpn., 65, 535-540 1992.
83.
杉本直己, 松村彰子, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用VIII.GC塩基対からなるRNA・DNAキメラ体の特性
甲南大学紀要 理学編, 39, 189-204 1992.
82.
杉本直己, 菅野竹雄, 佐々木宗夫
甲核酸の構造と機能に関与する微視的相互作用VII.RNA-DNAハイブリッド型オクタヌクレオチドr(CU)4・d(AG)4の二重らせんの性質
甲南大学紀要 理学編, 39, 29-35 1992.
81.
Y. Mizukami, H. Nakatsuji, M. Hada, M. Sasaki, and N. Sugimoto
Ab initio MO calculations of model molecules for ribozyme reaction including an Mg2+ ion
Chem. Lett., 2119-2122 1991.
80.
N. Sugimoto, K. Honda, and M. Sasaki
Self-complementary double-helix formation of d(TCATGA) and d(TGATCA)
Rep. Prog. Poly. Phys. Jpn., 34, 647-648 1991.
79.
N. Sugimoto, Y. Shintani, A. Tanaka, and M. Sasaki
Triple-helix formation of (dA)8 and (dT)8 
Rep. Prog. Poly. Phys. Jpn., 34, 643-646 1991.
78.
N. Sugimoto, A. Matsumura, K. Hasegawa, and M. Sasaki
Effect of unpaired terminal nucleotides of substrate RNAs on the RNA ligation with T4 RNA ligase
Bull. Chem. Soc. Jpn., 64, 2978-2982 1991.
77.
N. Sugimoto, Y. Shintani, and M. Sasaki
Effect of the third-strand length on the formation of DNA triple helix
Nucleic Acids Symp. Ser., 25, 183-184 1991.
76.
N. Sugimoto, A. Matsumura, K. Hasegawa, and M. Sasaki
Effect on dangling ends on the stability of a DNA double helix
Nucleic Acids Symp. Ser., 25, 51-52 1991.
75.
N. Sugimoto, H. Kawai, and M. Sasaki
Relationship between catalytic activity and stability of a hammerhead ribozyme with/without a hairpin
Chemistry Express, 6, 691-694 1991.
74.
N. Sugimoto, A. Matsumura, and M. Sasaki
The effect of actinomycin D on the transition of poly(dG-dMeC) from right-handed to left-handed form
Chemistry Express, 6, 507-510 1991.
73.
A. E. Peritz, R. Kierzek, N. Sugimoto, and D. H. Turner
Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops
Biochemistry, 30, 6428-6436 1991.
72.
N. Sugimoto, K. Hasegawa, A. Matsumura, and M. Sasaki
Effect of dangling ends on the double-helix melting of ribooligonucleotides at different Na+ concentrations
Chem. Lett., 1291-1294 1991.
71.
N. Sugimoto, Y. Shintani, and M. Sasaki
Triple-helix and double-helix formations of octamers of deoxyriboadenylic and deoxyribothymidylic acids
Chem. Lett., 1287-1290 1991.
70.
N. Sugimoto, N. Monden, and M. Sasaki
Influence of cis-diamminedichloroplatinum (II) on the reaction of propidium with RNAs
Chemistry Express, 6, 209-212 1991.
69.
N. Sugimoto, K. Hasegawa, and M. Sasaki
Influence of mononucleotides on the reaction of tetrakis(4-N-methylpyridyl)porphine with RNAs
Chemistry Express, 6, 205-208 1991.
68.
N. Sugimoto, A. Matsumura, and M. Sasaki
Stability of an oligonucleotide helix containing a terminal fluorescent nucleotide
Book of Abstract: 7th Conver. Biomol. Stereodynam., a219 1991.
67.
N. Sugimoto and M. Sasaki
Stabilization energy of the catalytic core of the Tetrahymena ribozyme
Chem. Lett., 345-348 1991.
66.
N. Sugimoto, A. Tanaka, Y. Shintani, and M. Sasaki
Double-helix melting of octamers of deoxyriboadenylic and deoxyribothymidylic acids in the presence of ethidium
Chem. Lett., 9-12 1991.
65.
杉本直己, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用V 非塩基対部位をもつRNA二重らせんの異常な融解挙動
甲南大学紀要 理学編, 38, 43-52 1991.
64.
杉本直己, 新谷由紀, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用VI DNAオリゴマーの三重らせん形成
甲南大学紀要 理学編, 38, 99-114 1991.
63.
M. Sasaki, A. Tanaka, K. Iokawa, N. Sugimoto, and T. Sugano
Cationic micellar effect upon the protonation of 2,4-dimethyl-3-ethylpyrrole
Chemistry Express, 5, 925-928 1990.
62.
N. Sugimoto, N. Monden, and M. Sasaki
Double-helix melting of octamers of deoxyriboguanylic and deoxyribocytidylic acids
Chemistry Express, 5, 765-768 1990.
61.
N. Sugimoto, Y. Shintani, and M. Sasaki
Melting of double-helix of the decamers of deoxyriboadenylic and deoxyribothymidylic acids in the presence of ethidium
Chemistry Express, 5, 677-680 1990.
60.
N. Sugimoto, K. Honda, and M. Sasaki
Stability of oligonucleotide GGCGUC and CGGCUG helices
Chemistry Express, 5, 673-676 1990.
59.
N. Sugimoto, K. Hasegawa, and M. Sasaki
Stability of 3’ dangling ends on the core helix of AUGCAU at various Na+ concentrations
Nucleic Acids Symp. Ser., 22, 107-108 1990.
58.
N. Sugimoto, N. Monden, M. Sasaki, S. Yamakage, and H. Takaku
Thermodynamics and kinetics for the helix formation of the P3 region in Tetrahymena ribozyme
Nucleic Acids Symp. Ser., 22, 45-46 1990.
57.
N. Sugimoto, N. Monden, and M. Sasaki
Application of energy parameters of RNA stability to the reaction of hammerhead ribozymes
Chemistry Express, 5, 585-588 1990.
56.
N. Sugimoto, A. Matsumura, and M. Sasaki
Stability of oligonucleotide YAUGCAU helices
Chemistry Express, 5, 581-584 1990.
55.
N. Sugimoto, K. Hasegawa, and M. Sasaki
Binding behavior of tetrakis(4-N-methylpyridyl)porphine with DNA in ethanol-buffer solution
Rep. Prog. Poly. Phys. Jpn., 33, 733-734 1990.
54.
N. Sugimoto, N. Monden, and M. Sasaki
Double-helix formation of CGCAGCG
Rep. Prog. Poly. Phys. Jpn., 33, 729-732 1990.
53.
N. Sugimoto, K. Hasewgawa, and M. Sasaki
Salts effects on equilibrium and kinetics of the reaction of tetrakis(1-methyl-4-pyridinio)porphine with DNA
Bull. Chem. Soc. Jpn., 63, 1641-1646 1990.
52.
N. Sugimoto, M. Sasaki, R. Kierzek, and D. H. Turner
Inhibition of deoxyribooligonucleotides on the circle opening reaction of the intervening sequence from Tetrahymena thermophila
Chem. Lett., 747-748 1990.
51.
N. Sugimoto, K. Hasegawa, N. Monden, and M. Sasaki
Reactions of tetrakis(4-N-methylpyridyl)porphine and propidium with poly(A)•poly(U) and poly(I)•poly(C)
Chemistry Express, 5, 399-402 1990.
50.
N. Sugimoto, K. Hasegawa, and M. Sasaki
Salt effect on double-helix formation of AUGCAU
Chemistry Express, 5, 249-252 1990.
49.
N. Sugimoto, T. Sugano, and M. Sasaki
Salt and pressure effects on reaction of drugs binding to nucleic acids
Review of Physical Chemistry of Japan, Special issue, 39-48 1990.
48.
N. Sugimoto, N. Monden, and M. Sasaki
Thermodynamics and kinetics of propidium binding to poly(A)•poly(U) in aqueous solution
Bull. Chem. Soc. Jpn., 63, 697-701 1990.
47.
N. Sugimoto, Y. Shintani, and M. Sasaki
Double-helix formation by oligodeoxyriboadenylic and oligodeoxyribothymidylic acids
Chemistry Express, 5, 65-68 1990.
46.
M. Sasaki, A. Tanaka, N. Sugimoto, and T. Sugano
Activation parameters for the proton-transfer reaction of 1,8-bis(dimethylamino) naphthalene in micellar solution
Chemistry Express, 5, 41-44 1990.
45.
杉本直己, 長谷川慶子, 門田典子, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用IV 核酸ポリマーと薬物の反応
甲南大学紀要 理学編, 37, 163-175 1990.
44.
杉本直己, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用III 塩基対逐次形成モデルのDNAオリゴマーへの適用
甲南大学紀要 理学編, 37, 77-86 1990.
43.
N. Sugimoto, M. Sasaki, R. Kierzek, and D. H. Turner
Binding of a fluorescent oligonucleotide to a circularized intervening sequence from Tetrahymena thermophila
Chem. Lett., 2223-2226 1989.
42.
N. Sugimoto, Y. Shintani, K. Hasegawa, and M. Sasaki
Ethanol effect on the reactions of DNA with actinomycin D and tetrakis(4-N-methylpyridyl)porphine
Chemistry Express, 4, 661-664 1989.
41.
N. Sugimoto and M. Sasaki
Application of improved free-energy parameters of RNA stability to codon-anticodon interactions
Bull. Chem. Soc. Jpn., 62, 3745-3747 1989.
40.
N. Sugimoto, A. Tanaka, and M. Sasaki
Thermodynamic parameters for melting of the stem regions in the self-splicing intervening sequence from Tetrahymena
Chemistry Express, 4, 613-616 1989.
39.
N. Sugimoto, K. Hasegawa, Y. Shintani, and M. Sasaki
Salt effect on the reactions of DNA with actinomycin D and tetrakis(4-N-methylpyridyl)porphine
Chemistry Express, 4, 609-612 1989.
38.
M. Sasaki, K. Hirata, N. Sugimoto, and T. Sugano
Effect of α-cyclodextrin inclusion on kinetics of complex formation between Co(II) Ion and pyridine-2-azo-p-dimetylaniline
Chemistry Express, 4, 475-478 1989.
37.
N. Sugimoto, M. Sasaki, R. Kierzek and D. H. Turner
Mg2+ effects on a circle opening reaction of the self-splicing intervening sequence from Tetrahymena thermophila
Nucleic Acids Symp. Ser., 21, 117-118 1989.
36.
N. Sugimoto, K. Hasegawa, N. Monden, and M. Sasaki
Electrostatic interaction in the reaction between porphyrin and DNA
Nucleic Acids Symp. Ser., 21, 7-8 1989.
35.
N. Sugimoto, N. Monden, and M. Sasaki
Ethanol and salts effects on the reaction of azure B with poly(A)poly(U) and poly(dA)poly(dT)
Rep. Prog. Poly. Phys. Jpn., 32, 715-718 1989.
34.
N. Sugimoto, M. Sasaki, and D. H. Turner
Mg2+ contribution to a formation of active form of ribozyme
Rep. Prog. Poly. Phys. Jpn., 32, 711-714 1989.
33.
N. Sugimoto, M. Sasaki, and D. H. Turner
Reaction of a circularized intervening sequence with the dinucleotide CU at high temperatures
Chemistry Express, 4, 405-408 1989.
32.
N. Sugimoto, M. Sasaki, and D. H. Turner
Behaviors of AA, CA, GA, terminal mismatches and UA terminal base-pair in ribooligonucleotide
Chemistry Express, 4, 401-404 1989.
31.
N. Sugimoto, N. Monden, and M. Sasaki
Propidium binding to DNA and tRNA in solution
Chemistry Express, 4, 385-388 1989.
30.
N. Sugimoto, M. Tomka, R. Kierzek, P. C. Bevilacqua, and D. H. Turner
Effects of substrate structure on the kinetics of circle opening reactions of the self-splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg2+ binding interactions
Nucleic Acids Res., 17, 355-371 1989.
29.
M. Sasaki, I. Nishimura, N. Sugimoto, and T. Sugano
Inclusion kinetics of crystal violet into g-cyclodextrin
Chemistry Express, 4, 65-68 1989.
28.
N .Sugimoto, K. Hasegawa, and M. Sasaki
Binding of pyridine-2-azo-p-dimethylaniline to DNA in ethanol-water solution
Chemistry Express, 4, 29-32 1989.
27.
杉本直己, D. H. Turner, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用II.テトラヒメナ・リボザイムの活性位の構造
甲南大学紀要 理学編, 36, 89-97 1989.
26.
杉本直己, D. H. Turner, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に関与する微視的相互作用IⅠRNAの二重らせん形成
甲南大学紀要 理学編, 36, 41-50 1989.
25.
N. Sugimoto and M. Sasaki
Pressure effect on ethidium binding to DNA
Chemistry Express, 3, 487-490 1988.
24.
N. Sugimoto, R. Kierzek, and D. H. Turner
Kinetics for reaction of a circularized intervening sequence with CU, UCU, CUCU, and CUCUCU: mechanistic implications from the dependence on temperature and on oligomer and Mg2+ concentrations
Biochemistry, 27, 6384-6392 1988.
23.
M. Sasaki, H. Takahashi, N. Sugimoto, and T. Sugano
Micellar effect on rate of proton-transfer reaction of 1,8-bis(dimethylamino) naphthalene in aqueous solution
Chemistry Express, 3, 407-410 1988.
22.
D. H. Turner, N. Sugimoto, S. D. Dreiker, S. M. Freier, and R. Kierzek
Hydrogen bonding and stacking contributions to nucleic acid stability
Structure and Expression (R. H. Sarma and M. H. Sarma Eds.), Adenine Press, NY, 1, 249-259 1988.
21.
杉本直己, 佐々木宗夫
T4 RNAリガーゼ反応に対するオリゴヌクレオチドの塩基対形成の影響
Chemistry Express, 3, 483-486 1988.
20.
杉本直己, D. H. Turner, 菅野竹雄, 佐々木宗夫
核酸の構造と機能に及ぼす非塩基対部位の影響
甲南大学紀要 理学編, 35, 103-114 1988.
19.
D. H. Turner, N. Sugimoto, R. Kierzek, and S. D. Dreiker
Free energy increments for hydrogen bonds in nucleic acid base pairs
J. Am. Chem. Soc., 109, 3783-3785 1987.
18.
D. H. Turner, N. Sugimoto, J. A. Jaeger, C. E. Longfellow, S. M. Freier, and R. Kierzek
Improved parameters for prediction of RNA structure
Cold Spring Harbor Symposia on Quantitative Biology, 52, 123-133 1987.
17.
N. Sugimoto, R. Kierzek, and D. H. Turner
Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides
Biochemistry, 26, 4559-4562 1987.
16.
N. Sugimoto, R. Kierzek, and D. H. Turner
Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic Acid
Biochemistry, 26, 4554-4558 1987.
15.
D. H. Turner, N. Sugimoto, R. Kierzek, and S. D. Dreiker
Free energy increments for hydrogen bonds in nucleic acid base pairs
J. Am. Chem. Soc., 109, 3783-3785 1987.
14.
S. M. Freier, R. Kierzek, J. A. Jaeger, N. Sugimoto, M. H. Caruthers, T. Neilson, and D. H. Turner
Improved free-energy parameters for predictions of RNA duplex stability
Proc. Natl. Acad. Sci. USA, 83, 9373-9377 1986.
13.
N. Sugimoto, R. Kierzek, S. M. Freier, and D. H. Turner
Energetics of internal GU mismatches in ribooligonucleotide helixes
Biochemistry, 25, 5755-5759 1986.
12.
S. M. Freier, N. Sugimoto, A. Sinclair, D. Alkema, T. Neilson, R. Kierzek, M. H. Caruthers, and D. H. Turner
Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids
Biochemistry, 25, 3214-3219 1986.
11.
D. H. Turner, S. M. Freier, N. Sugimoto, D. R. Hickey, J. A. Jaeger, A. Sinclair, D. Alkema, T. Neilson, M. H. Caruthers, and R. Kierzek
Improved parameters for prediction of RNA secondary structure and insights into why RNA forms double helixes
Structure and Dynamics of RNA (P. H. van Kinppenberg and C. W. Hibers, Eds.), Plenum Press, NY, pp1-13 1986.
10.
N. Sugimoto and M. Sasaki
Kinetic hydrogen isotope effects in the reaction between 2,4,6-trinitrotoluene and 1-ethylpiperidine in acetonitrile. The effect of pressure
J. Chem. Soc. Fraday Trans., 1, 2959-2966 1985.
9.
N. Sugimoto and M. Sasaki
Substituent effects on proton tunnelling. Reaction between 2,4,6-trinitrotoluene and 1-substituted piperidines in acetonitrile
J. Chem. Soc. Fraday Trans., 1, 1441-1445 1985.
8.
N. Sugimoto, M. Sasaki, and J. Osugi
Solvent, pressure, and deuterium isotope effects on proton tunneling. The reaction between 2,4,6-trinitrotoluene and 1,8-diazabicyclo[5.4.0]undec-7-ene in aprotic solvents
J. Chem. Soc. Perkin Trans., 2, 655-659 1984.
7.
N. Sugimoto, M. Sasaki, and J. Osugi
Kinetic study of proton tunneling in the reaction between 2,4,6-trinitrotoluene and 1,8- diazabicyclo[5.4.0]-undec-7-ene in benzonitrile
Bull. Chem. Soc. Jpn., 57, 366-369 1984.
6.
N. Sugimoto, M. Sasaki, and J. Osugi
Pressure effect on tunneling of the proton- and deuteron-transfer reaction of 2,4,6-trinitrotoluene with 1,8-diazabicyclo[5.4.0]undec-7-ene in acetonitrile
J. Am. Chem. Soc., 105, 7676-7680 1983.
5.
N. Sugimoto, M. Sasaki, and J. Osugi
Kinetics and tunneling in the proton- and deuteron-transfer reaction between 2,4,6,-trinitrotoluene and 1,8-diazabicyclo[5.4.0]undec-7-ene in some aprotic solvents
J. Phys. Chem., 86, 3418-3423 1982.
4.
M. Sasaki, N. Sugimoto, and J. Osugi
Pressure effect on proton/deuteron transfer reactions of 4-nitro-phenylnitromethane + N,N,N’,N’-tetramethylguanidine (TMG), 2,4,6-trinitorotoluene (TNT) + TMG, and TNT + 1,8-diazabicyclo[5.4.0]undec-7-ene in some aprotic solvents
High Pressure in Research and Industry, 2, 676-679 1982.
3.
N. Sugimoto, M. Sasaki, and J. Osugi
Pressure effect on rate constants of proton-transfer reactions from 2,4,6-trinitrotoluene to N,N,N’,N’-tetramethylguanidine and 1,8-diazabicyclo[5.4.0]undec-7-ene in acetonitrile and dichloromethane
Bull. Chem. Soc. Jpn., 54, 2598-2602 1981.
2.
N. Sugimoto, M. Sasaki, and J. Osugi
Influence of pressure on primary kinetic isotope effects of the proton-transfer reaction between 4-nitrophenyl-nitromethane and 1,1’,3,3’-tetramethylguanidine in toluene and dichloromethane
Bull. Chem. Res. Kyoto Univ., 59, 63-71 1981.
1.
M. Sasaki, N. Sugimoto, and J. Osugi
High-pressure stopped-flow kinetics of proton-transfer reaction between 4-nitrophenylnitromethane and 1,1’,3,3’-tetramethylguanidine in aprotic solvents
Chem. Lett., 887-890 1980.